Template-based Modeling Results for YJGA_ECOLI

Submitted Primary Sequence

>Length 183
MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGAEIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALDKLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKEGNKPPKSARQIFQYLRELAENEG
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGAEIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALDKLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKEGNKPPKSARQIFQYLRELAENEG
CCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGAEIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALDKLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKEGNKPPKSARQIFQYLRELAENEG
553223321331323323333332222131212311310230012003013300440202230220022023022202321022003002322231023002413433332121122022003201421330022003202311131023002203424435332310230021023123434
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGAEIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALDKLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKEGNKPPKSARQIFQYLRELAENEG
1	MUSTER	2p0tA	0.411	0.798	2.731	threading_1	-----------------------------------LHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTNIARKRHILFIGKLRD-QDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDELQ-
2	SPARKS	2p0ta	0.425	0.798	2.908	threading_2	-----------------------------------LHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTNIARKRHILFIGK-LRDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDELQ-
3	PROSPECT2	2p0tA	0.425	0.798	2.313	threading_3	L-----------------------------------HALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTNIARKRHILFIGK-LRDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDELQ-
4	PPA-I	2p0tA	0.411	0.798	5.441	threading_4	-----------------------------------LHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTNIARKRHILFIGKLRD-QDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDELQ-
5	HHPRED-l	2p0t_A	0.418	0.798	10.593	threading_5	-----------------------------------LHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTAIARKRHILFIGKL-RDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDELQ-
6	HHPRED-g	2p0t_A	0.418	0.798	9.317	threading_6	-----------------------------------LHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTNIARKRHILFIGKL-RDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDELQ-
7	SP3	2p0ta	0.425	0.798	1.780	threading_7	-----------------------------------LHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTNIARKRHILFIGK-LRDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDELQ-
8	SAM-T99	2p0tA	0.431	0.787	6.162	threading_8	-----------------------------------LHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTNIARKRHILFIGK-LRDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDE---
9	MUSTER	2p0tA2	0.500	0.393	1.239	threading_9	--------------------------------------------------------------------------------------------------------------YNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDELQ-
10	SPARKS	1ihga1	0.133	0.863	0.686	threading_10	---------GSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQEMAIKKLRYVEGSRAADADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLYDQALADLKKAQEIAPEKAIQAELLKVKQKIKAQKDKEKAAY----------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.694 to 2p0tA SCOP code=a.290.1.1	TM-score=0.694 to 2p0tA SCOP code=a.290.1.1	TM-score=0.693 to 2p0tA SCOP code=a.290.1.1	TM-score=0.685 to 2p0tA SCOP code=a.290.1.1	TM-score=0.694 to 2p0tA SCOP code=a.290.1.1