Template-based Modeling Results for YJEM_ECOLI

Submitted Primary Sequence

>Length 500
MPHTIKKMSLIGLILMIFTSVFGFANSPSAYYLMGYSAIPFYIFSALLFFIPFALMMAEMGAAYRKEEGGIYSWMNNSVGPRFAFIGTFMWFSSYIIWMVSTSAKVWVPFSTFLYGSDMTQHWRIAGLEPTQVVGLLAVAWMILVTVVASKGINKIARITAVGGIAVMCLNLVLLLVSITILLLNGGHFAQDINFLASPNPGYQSGLAMLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFAKGIVFAAIVISIGYSLAIFLWGVSTNWQQVLSNGSVNLGNITYVLMKSLGMTLGNALHLSPEASLSLGVWFARITGLSMFLAYTGAFFTLCYSPLKAIIQGTPKALWPEPMTRLNAMGMPSIAMWMQCGLVTVFILLVSFGGGTASAFFNKLTLMANVSMTLPYLFLALAFPFFKARQDLDRPFVIFKTHLSAMIATVVVVLVVTFANVFTIIQPVVEAGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRVAKNPQWAVE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPHTIKKMSLIGLILMIFTSVFGFANSPSAYYLMGYSAIPFYIFSALLFFIPFALMMAEMGAAYRKEEGGIYSWMNNSVGPRFAFIGTFMWFSSYIIWMVSTSAKVWVPFSTFLYGSDMTQHWRIAGLEPTQVVGLLAVAWMILVTVVASKGINKIARITAVGGIAVMCLNLVLLLVSITILLLNGGHFAQDINFLASPNPGYQSGLAMLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFAKGIVFAAIVISIGYSLAIFLWGVSTNWQQVLSNGSVNLGNITYVLMKSLGMTLGNALHLSPEASLSLGVWFARITGLSMFLAYTGAFFTLCYSPLKAIIQGTPKALWPEPMTRLNAMGMPSIAMWMQCGLVTVFILLVSFGGGTASAFFNKLTLMANVSMTLPYLFLALAFPFFKARQDLDRPFVIFKTHLSAMIATVVVVLVVTFANVFTIIQPVVEAGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRVAKNPQWAVE
CCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEEEEEHHHHHHHHHHCCCHHEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPHTIKKMSLIGLILMIFTSVFGFANSPSAYYLMGYSAIPFYIFSALLFFIPFALMMAEMGAAYRKEEGGIYSWMNNSVGPRFAFIGTFMWFSSYIIWMVSTSAKVWVPFSTFLYGSDMTQHWRIAGLEPTQVVGLLAVAWMILVTVVASKGINKIARITAVGGIAVMCLNLVLLLVSITILLLNGGHFAQDINFLASPNPGYQSGLAMLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFAKGIVFAAIVISIGYSLAIFLWGVSTNWQQVLSNGSVNLGNITYVLMKSLGMTLGNALHLSPEASLSLGVWFARITGLSMFLAYTGAFFTLCYSPLKAIIQGTPKALWPEPMTRLNAMGMPSIAMWMQCGLVTVFILLVSFGGGTASAFFNKLTLMANVSMTLPYLFLALAFPFFKARQDLDRPFVIFKTHLSAMIATVVVVLVVTFANVFTIIQPVVEAGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRVAKNPQWAVE
55432220010000000000000011001001310110000000000011000000001001113434100000013011220000000000000001001000100000000010131133121111201100000000000000001121133013002100201102111111101022113222112211112121021201000000000000000002000000341332343013000000000000100000001001213201331211000000000200020002002112200100010000000001000000000000100010003202321013100322322011100001000000001011101210110021001011000000000000000002133313220100212200000000000000000001001100221102000110001000000000002100221342232225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPHTIKKMSLIGLILMIFTSVFGFANSPSAYYLMGYSAIPFYIFSALLFFIPFALMMAEMGAAYRKEEGGIYSWMNNSVGPRFAFIGTFMWFSSYIIWMVSTSAKVWVPFSTFLYGSDMTQHWRIAGLEPTQVVGLLAVAWMILVTVVASKGINKIARITAVGGIAVMCLNLVLLLVSITILLLNGGHFAQDINFLASPNPGYQSGLAMLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFAKGIVFAAIVISIGYSLAIFLWGVSTNWQQVLSNGSVNLGNITYVLMKSLGMTLGNALHLSPEASLSLGVWFARITGLSMFLAYTGAFFTLCYSPLKAIIQGTPKALWPEPMTRLNAMGMPSIAMWMQCGLVTVFILLVSFGGGTASAFFNKLTLMANVSMTLPYLFLALAFPFFKARQDLDRPFVIFKTHLSAMIATVVVVLVVTFANVFTIIQPVVEAGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRVAKNPQWAVE
1	MUSTER	3l1lA	0.170	0.836	2.613	threading_1	----AHKVGLIPVTLMVSGAIMGSGLLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYL-----------SYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG-----------------WFWFRGETYMA-AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASP-----FGDAARMAL-----------------GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSIS--PNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHGKARPAYL---------------AVTTIAFLYCIW-AVVGSG---AKEVMWS--FVTLMVITAMYALNYNRLHKNP--PLD
2	SPARKS	3ob6a	0.162	0.850	5.252	threading_2	--ADAHKVGLIPVTLMVSGNIMGVFLLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFF-----------PILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFW--------FRGETYMAAWNVSGLGTFGAIQSLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSAS---------PFGDAARM-------------ALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQL--------SSISPGLVSSVSVIFTLVPYLYTCAALLLLGHGHGKARPAYLA-------------VTTIAFLYCIWAVV---GSG---AKEVMWS--FVTLMVITAMYALNYNRLHKNPY-PLD
3	PROSPECT2	3gi8C	0.137	0.864	2.222	threading_3	MELKNKKLSLWEAVSMAVGVMIGFSIFGVGAKIAGRNLPETFILSGIYALL-VAYSYTKLGAKIVSN-AGPIAFIHKAIGDNIITGALS--ILLWMSYVISIALFAKGFAGYFLPLINAPINT--------FNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIF---------AGLITIHPSYVIPDLAPSAVS-GMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASEN----ALAVAAKPFL-----------------GNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK-STEGLYITSALGVLFALLFN---------MEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIF-------------SFIVVLGVFLLLLYYQWITN--RFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNMYVKS
4	PPA-I	3l1lA	0.172	0.838	5.600	threading_4	----AHKVGLIPVTLMVSGAIMGVFLLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-----------DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG-----------------WFWFRGETYMA-AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASP-----FGDAARMAL-----------------GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSIS--PNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHHFGKARPAYL---------------AVTTIAFLYCIW-AVVGSG---AKEVMWS--FVTLMVITAMYALNYNRLHKNP-YPLD
5	HHPRED-l	3gia_A	0.142	0.848	7.828	threading_5	--LKNKKLSLWEAVSMAVGVMIGASIFGVGAKIAGRNLPETFILSG-IYALLVAYSYTKLGAKIVSN-AGPIAFIHKAIGDNITGALSILLWMSYVISIALFAKGFAGYFLPLI-NAP----------INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLIT--IHPS------YVIPDLAPS--AVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKAS----ENALAVAAKPF-----------------LGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYIT-SALGVLFALLF---------NMEGVASITSAVFMVIYLFVILSHYILIDEV----GG-----R-------KEIVIIVVLGVFLLLLYYQWIT-NRFVFYGIIA-TFIGVLIFEIIYRKVTKRTFSNN-MYV-
6	HHPRED-g	3gia_A	0.128	0.846	7.177	threading_6	--LKNKKLSLWEAVSMAVGVMIGASIFGVGAKIAGRNLPETFILSG-IYALLVAYSYTKLGAKIVSN-AGPIAFIHKAIGDNITGALSILLWMSYVISIALFAKGFAGYFLP-LINAP----------INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLIT--IHPSYV-IP-----DLAP--SAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKAS----ENALAVAAKP----F-------------LGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYIT-SALGVLFALLF---------NMEGVASITSAVFMVIYLFVILSHYILIDEVGG----------------RKEIVIFSFIVVLGVFLYYQWI-TNRFVFYGI----IATFIGVLIFEIIYRKVTKRTFSNNMY
7	SP3	3ob6a	0.177	0.848	4.717	threading_7	--ADAHKVGLIPVTLMVSGNIMGFL-LPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFF-----------PILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA-LIPIVGIAVFGWFWFRGE-------TYMAAWNVSGLGTFGAIQSLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASP-----FGDAARMA-----------------LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSIS--------PGLVSSVSVIFTLVPYLYTCAALLLLGHGFGKARPAYL---------------AVTTIAFLYCIW-AVVGSG---AKEVMWS--FVTLMVITAMYALNYNRLHKNP-YPLD
8	SAM-T99	3l1lA	0.150	0.838	8.255	threading_8	----AHKVGLIPVTLMVSGAIMGSGVFPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDP-SPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF-----------PILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF-WFRGETYMA-----------------AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVS-----ASPF-----------------GDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQL--SSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHH----------FGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMITAMYALNYNRLHKNPYPLDA------------
9	MUSTER	3gi9C	0.142	0.860	2.543	threading_9	MELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAGRNLPETFILSGIYALL-VAYSYTKLGAKIVSN-AGPIAFIHKAIGDN--IITGALSILLWMSYVI-SIALFAKGFAGYF--------LPLIAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLI--------TIHPSYVIPDLAPS--AVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASEN---------------------ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK-STEGLYITSALGVLFALLFN---------MEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFS-------------FIVVLGVFLLLLYYQWITN--RFVFYGIIATFIGVLIFEIIYRKVTKRFSNNMY-SLE
10	SPARKS	3l1la	0.169	0.838	5.187	threading_10	----AHKVGLIPVTLMVSGAIMGVFLLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYL-----------SYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAV-----------------FGWFWFRGETYMA-AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASP-----FGDAARMAL-----------------GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQL--SSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHGKARPAYL---------------AVTTIAFLYCIWAVV-GSG---AKEVMWS--FVTLMVITAMYALNYNRLHKNPY-PLD

Predicted Tertiary Structure


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TM-score=0.667 to 2q6hA SCOP code=f.54.1.1	TM-score=0.677 to 2q6hA SCOP code=f.54.1.1	TM-score=0.681 to 2q6hA SCOP code=f.54.1.1	TM-score=0.689 to 2q6hA SCOP code=f.54.1.1	TM-score=0.661 to 2q6hA SCOP code=f.54.1.1