Template-based Modeling Results for YJCD_ECOLI

Submitted Primary Sequence

>Length 449
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI
CCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI
55332242210011103023411212100010001000000000000000030211220111010000000000000002000000000010000000001022110110000000000000000000011100420120002000000000000010211100031223110112131111100000000000000131311000000000000000112222122111111111232110010111010001010000000000000010000010001203123332312301200000000000000010020010010000022213101100000000000000010021011100000000000000120230302202200000000000000010010000000000002001231440110000000000000002223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI
1	MUSTER	3qe7A	0.185	0.831	1.086	threading_1	-------------RAIGVSER-PPLLQTIPLSLQHLFAMFGATVLVPVLF---HIN----PATVLLFNGIGTLLYLFICKG---IPAYLGSS--FAFPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKTGWLDVLPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQT------PDSK--TIIISITTLAVTVLGSVLFLAIPILIGVLVGYALSFAMGIVDT-TPIINAHWFAPTLYTP---------RFEWFAILTILPAALVVIAEHVGHLVVTANIVK--KDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAI---TRTWVIGGAAIFAILLSCVGKLAMIPPVMGGVSLLLYGVIGASGIR-VDYNKAQNLILTSVILIIGVAELK---GMALATIVGIGLSLI---FKLIS--------------------
2	SPARKS	3qe7a	0.178	0.837	1.110	threading_2	-------------RAIGVSER-PPLLQTIPLSLQHLFAMFGATVLVPVLF---HINPA----TVLLFNGIGTLLYLFIGKIPAYLGSS------FAFPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAG---LLPAE------GQTPDSKTIIISITTLAVTVLGSVLFRIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPR---------FEWFAILTILPAALVVIAEHVGHLVVTANIVK--KDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAI---TRTWVIGGAAIFAILLCVGKLAAAIPLPVMGGVSLLLYGVIGASESKVDYNKQNLILTSVILIIGVGAKVNIGKGMALATIVGIGLSLI---FKLIS--------------------
3	PROSPECT2	1jdha	0.102	0.960	1.793	threading_3	---AVVNLIRAIPELTKLNDEDQVVVNKAAVMVHQLSASRHAIMRSPQMVSRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPA-------LVKMLGSPVDSVLFYA-ITTLHNLLLHQEGAKMAVRLALQKMVALKFLAITTDCLQILAYGNQESILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSKMMVCQVGGIEALVRTVLRAGDR-------EDITEPAICALRHLTSRHQEAEMAQNAPVVVKLLHPPSHWPLIKATVGLIRNLCPANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRNTIPLFVQLLYSPIENIQRVAAGVLCELAAAEAIEAEGA
4	PPA-I	3qe7A	0.162	0.853	1.718	threading_4	-------------RAIGVSER-PPLLQTIPLSLQHLFAMFGATVLVPVLF-------HINPATVLLFNGIGTLLYLFICKG--KIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKTGWLDVLPPAAMGAIVAVIGLELAGVAAGMAG---------LLPAEGQTPDSKTIIISITTLAVTVLGSVLFRIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPR---------FEWFAILTILPAALVVIAEHVGHLVVTANIVK--KDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAPLPVMGGVSLLLYGVIGASESKVDYNKAQNLILTSVILIIGVSGAKVNKGMALATIVGIGLSLIFKLIS-----------------------
5	HHPRED-l	3qe7_A	0.171	0.833	9.157	threading_5	-------------RAIGVSERP-PLLQTIPLSLQHLFAMFGATVLVPVLF---HINP----ATVLLFNGIGTLLYLFICKGKI--PAYLGSSAFISVLLLLPL--GYEVALGGFIMCGVLFCLVSFIVGTGWLDVLFPPAA-------MGAIVAVIGLELAGVAAGMA---GLLPAETPDSKTIIISITTLAVTVLGSVRGFLAPILIGVLVGYALSFAMGIVDTTPHWFALPTLYT----P---RF------EWFAILTILPAALVVIAEHVGHLVVTANIVK---KDLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMATRVYSTWVIGGAAIFAILLSCLAAAIQMIPLPVMGGVSLLLGIRVLIES-KVDYNKAQTSVILIIGVSGAKVNIAAEKGMALATIVGIGLSLIFKLIS-----------------------
6	HHPRED-g	3qe7_A	0.156	0.842	8.840	threading_6	-------------RAIGVSERP-PLLQTIPLSLQHLFAMFGATVLVPVLF---HINP----ATVLLFNGIGTLLYLFICKGKI--PAYLGSSAFISVLLLLPL--GYEVALGGFIMCGVLFCLVSFIVGTGWLDVLFPPAA-------MGAIVAVIGLELAGVAAGMA---GLLPAETPDSKTIIISITTLAVTVLGSVRGFLAPILIGVLVGYALSFAMGIVD-TTPIINAHWFALPTLYPR---------FEWFAILTILPAALVVIAEHVGHLVVTANIVK---KDLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMATRVYSTWVIGGAAIFAILLSCLAAAIQMIPLPVMGGVSLLLYGVIGSGIRKVDYNKILTSVILIIGVSGAKVNIGAEKGMALATIVGIGLSLIFKLIS-----------------------
7	SP3	3qe7a	0.188	0.831	0.557	threading_7	-------------RAIGVSER-PPLLQTIPLSLQHLFAM-FGATVLVPVL--FHINPA----TVLLFNGIGTLLYLFIGKIPAY----LGSS--FAFPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQT------PDSK--TIIISITTLAVTVLGSVRGFIIPILIGVLVGYALSFAMGIVDTTP-IINAHWFAPTLYTPR---------FEWFAILTILPAALVVIAEHVGHLVVTANIVKLLRD----PGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAI---TRTWVIGGAAIFAILLCVGKLAAAIPLPVMGGVSLLLYGVIGASLIESKV-DYNKAQNLILTSVILIIGVSGAKGMALATIVGIGLSLI---FKLIS--------------------
8	SAM-T99	3qe7A	0.167	0.866	1.400	threading_8	RAIGVSERPPLL--------------QTIPLSLQHLFAMFGATVLVPVLFHINPA-------TVLLFNGIGTLLYLFICKGKIPA--YLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAH----WFALPTLYTP---------RFEWFAILTILPAALVVIAEHVGHLVVTANIVKK--DLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENI-GVMAITRVYSTWVIGGAAIFAILLLAAAIQMIPPVMGGVSLLLYGVIGASGIRKVDYNKAQNLILTSVILII--------------GVSGAKVNIGAAELKGMALATIVGIGLSLIF-------
9	MUSTER	3dh4A	0.150	0.922	0.873	threading_9	GGGGGGGGGGGGGGGG----KSLPWWAVGASLIAANISAEQFIGM-SGSGYSIGL----AIASYEWMSAITLIIVGKYF-LPIFI---KGIYTIPEF-VEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALET-DVIQVFFLVLGGFMTTYMAVSFIGMVDAAPGHFEMILNPQYMNLPGIAVLIGGLWVANLYYWGFQKGIVFAAFLKLIVPFLVDPQLMASLGDIAATNLPSAANADKAYPWLTQFLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDKEYISPDSGKLVNVGRTAAVVALIIACGQAFQYIQEYTGL--------VSPGILAVFLLGLFW----KKTT-SKGAIIGVVASIPFALFLKFMPLS-----MP-FMDQMLYTLLFTMVVIAFTSLSTS-VTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVL
10	SPARKS	1pw4a	0.091	0.902	0.910	threading_10	APHKARLPAAEIDPTYR------RLRWQIFLGIFFGYAAYYLVRKNFALAMPYGFSRGDLLSGISIAYGFSKFIMGSVSDRRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL----LGMAWFNDWHAA-LYMPAFCAILVALFAFAMMR------------------DTPQSCGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF-----ALDKSSWAYFLYEYAGIPGTLLC-GWMSDKV-------FRGNRGATGVFFMTLVTIATIVYWMNP-AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDG-WDGGFMIGGSILAVILLIVVMIGEK

Predicted Tertiary Structure


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TM-score=0.428 to 2q6hA SCOP code=f.54.1.1	TM-score=0.433 to 2q6hA SCOP code=f.54.1.1	TM-score=0.418 to 2q6hA SCOP code=f.54.1.1	TM-score=0.636 to 1xm9A SCOP code=a.118.1.24	TM-score=0.423 to 2q6hA SCOP code=f.54.1.1