Template-based Modeling Results for YJBB_ECOLI

Submitted Primary Sequence

>Length 543
MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKKPLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTFDLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGVQVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANLGSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVIYFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALANAARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEELAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSLDGLKELDALYEQLLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSLHLGLLGDMQRLNSLFCSVAYSVLEQPDEDEGRDEY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKKPLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTFDLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGVQVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANLGSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVIYFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALANAARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEELAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSLDGLKELDALYEQLLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSLHLGLLGDMQRLNSLFCSVAYSVLEQPDEDEGRDEY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKKPLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTFDLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGVQVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANLGSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVIYFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALANAARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEELAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSLDGLKELDALYEQLLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSLHLGLLGDMQRLNSLFCSVAYSVLEQPDEDEGRDEY
232002000000000000200120012000210220022013130100000000000020130000000100223102001000000001000000010000101100000000000001122321012002000000000000100120021023021011001101111000000000000001001000100000021110101000000001100000000010022112011000000002000000000001000200120111211000001000100000000000200020020003233323232313211220021121001100210120020011002002201312231132023113103201210220002124331133103200200200110220010023001200120222332112300310220022012002200200221122003302312220331132002100210243213113000000000000110010000002000223333324333
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKKPLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTFDLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGVQVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANLGSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVIYFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALANAARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEELAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSLDGLKELDALYEQLLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSLHLGLLGDMQRLNSLFCSVAYSVLEQPDEDEGRDEY
1	MUSTER	3ea5B	0.119	0.972	1.116	threading_1	IAAIADIELP-ELMKIMVDNTGENVKRASLLALGYMCESADPQSSNNILIAIVQGAQ-ETSKAVRLAALNALADSLIFIKNNMEEGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFQALYALTIATMKDKVASMTVEFWSTICEEEIDIDVVPNLLNLLTRQ--VSMSAGACLQLFAQNCGNILEPVLEFVEQNITANREAAVMAFGSYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLA--PIYNFYPALVDGLIGAANRIDNEFNARASAFSAL--TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT--LEDAQSLQELQSNILTVLAAVIRK-SPSSVEPVADMLMGLFFRLLEKKDIEDDVFYAISALAASLGKGFEK----YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEDFRRYSDAMMNVLAQMISNPNARRPAVLSVFGDIASNIADFIPYLNDIMALCVAAQNTKPENGTL
2	PROSPECT2	1qgra	0.105	1.000	2.482	threading_2	MTFLVELSRVLAARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDASQCVAGIACAEIPVNQELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIISLEFTKANFDKESERHFIMQVVCALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAADDDWNPCKAAGVCLGPEVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAALAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYLSSSFELIVQKLLETTDRPDGHQNNNSAKDCYPAVQKTTLVIMERLQQVLIQFNDLQSLLCATLQNVLRKVQHQDALVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRASNIIPFCDEVMQLLLENLGNENVHRSVKPQAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAMIHELLTEGRRSKTNKNQA
3	MUSTER	1qgkA	0.088	0.982	1.090	threading_3	PSSASQCVAGIACAEELIPQLVANVTEHMKESTLEAIGYICQQDKSNEILTAIIQGMRPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYPALFAITIEAMKDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPGALQYLVPILTQTLTKPCKAAGVCLMLLATCDDIRYRDAAVMAFGCLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLAAIYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAA-FELIVQKLLETTDRPDGHQNNLRSSAY-ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQS-TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYYQVCLAAVGLVG--DLCRALQ-----SNIIPFCDEVMQLLLENLGNENVHRPQILSVFGDIALAIGEFKKYLEVVLNTLQQASQAQVDKSDY
4	SPARKS	1xwma	0.100	0.387	3.256	threading_4	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFADDLASLHNKLIEMGRLTEVALQQAIEAFTQNANLAMAVIDGDGSIDALEEEVNDFALWLIAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKACIRI----GGQPFVMDIGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASLLAVAKTDA-ATLAQMNVLALVARYIERTADHATNIAEHLVYLVKGKHY--DF
5	PPA-I	1xwmA	0.100	0.387	1.308	threading_5	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFADDLASLHNKLIEMGRLTEVALQQAIEAFQTNANLAMAVIDGDGSIDALEEEVNDFALWLIAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKACIRIG----GQPFVMDIGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASLLAVAKTDAA-TLAQMNVLALVARYIERTADHATNIAEHLVYLVKGKHYDF--
6	PROSPECT2	2bkuB	0.094	1.000	2.408	threading_6	MGLSSQVLIILAALTLKAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLNVKRASLLALGYMCESADALVSSSNNILIAIVAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICVSMSAGACLQLFAQNCGNHEPVLEFVEQNITADNWRNREAAVMAQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEDFRRYSDAMMNVLAQMISNPNARREPAVLSVFGDIASNIGADFIPYLNDIMAKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVDATSRAAVGLIGDIAAMFPDGSIKQFY
7	HHPRED-l	1t72_A	0.124	0.372	5.393	threading_7	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGG-K---------LFKELEETKEQVIK-AKLVQEAIDKTEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRIALYQPEAGDLR---GIYKIVSDLER-GDEAENIAERAILLA----EEPPLKPYVNINF-SEIVKE-VNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLEREL-TYVLEDPR-NIKRA-HLSFVARHYERIADHAENVAEAAIYLSEGE------
8	MUSTER	2x1gF	0.105	0.982	1.072	threading_8	WQFSWQLMQ-QEVQFFGAITLHSKLMKHWREELKQKILESIVKIVLNRLCISLGAYIVHMEEVINTFQNQRSADVQLWIMLEVLTAIPEEARVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVEVVHKCYWPCIENELAESCLKTMVNIIIQYPKTAFVLIKMFLD--SLSEITKTEWKRENDIIVHIYMLFVSSV--ERHSTLLLSGITADPELSILVHRIVQEILHCTDKPGIYPVEE-SCSTMALAFWYMLQDEVFKPLYAHLTRILVREQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSRQIPRLMRVLAEPYEKLNVKLLGTALETMGSYCNWLMYIPPAINLLVRGLNSS---MSAQATLGLKELCRDADPLLNACHASLNTGRMFSIGKLMSL-EEIPKYLDIIVSPCFEELQAATPAARIRTIFRLNMISTLFSSLNTVLLVMQRTMPIFKRIAEMWVE
9	HHPRED-g	1t72_A	0.134	0.372	4.565	threading_9	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGG-KLFK---------ELEETKEQVIK-AKLVQEAIDATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRIALYQPEAGDLR---GIYKIVSDLER-GDEAENIA-ERAILL---AEEPPLKPYVNINF-SEIVKE-VNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLEREL-TYVLEDPR-NIKRA-HLSFVARHYERIADHAENVAEAAIYLSEGE------
10	SP3	1xwma	0.100	0.387	2.925	threading_10	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFADDLASLHNKLIEMGRLTEVALQQAIEAFTQNANLAMAVIDGDGSIDALEEEVNDFALWLIAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKACIRIGGQPFVMD----IGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASLLAVAKTDA-ATLAQMNVLALVARYIERTADHATNIAEHLVYLVKGKHY--DF

Predicted Tertiary Structure


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TM-score=0.760 to 3ea5B SCOP code=a.118.1.1	TM-score=0.894 to 1b3uA SCOP code=a.118.1.2	TM-score=0.576 to 1qgkA SCOP code=a.118.1.1	TM-score=0.735 to 1qgkA SCOP code=a.118.1.1	TM-score=0.681 to 1xwmA SCOP code=a.7.12.1