Template-based Modeling Results for YIJO_ECOLI

Submitted Primary Sequence

>Length 283
MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
CCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEECCCEEEEEEEEEEEEECCEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEECCHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
5522011002101312221200000222111121101010010000020101122110202301000010112112323220100000002221101112121310220022101310220021012002202222112200210000001102210123232223132002001200141031202131004102001200020013104100220011010210120142231303200220112102100200141242012201321233234332334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
1	MUSTER	3gbgA	0.124	0.887	2.328	threading_1	--------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKL-LVSYEINSSSIILLKKNSIQRFLSDENINVSVITISDSFIRSLKSYILGNKDLLLWN-----CEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIFITDDLD--AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
2	SPARKS	3gbga	0.123	0.894	3.551	threading_2	---------------KKSFQNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLILVSYEINSSSIILLKKNSIQRFSSLSDENINVSVI---TISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIFITDDLD--AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
3	PROSPECT2	3gbgA	0.119	0.890	3.368	threading_3	--------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLCLVSYEINSSSIILLKKNSIQRSLSDENINVSVITISDSFIRSLKSYILGNKDLLLWN-----CEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEK--KYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFML---------TGV
4	PPA-I	3gbgA	0.123	0.890	2.937	threading_4	--------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLILVSYEINSSSIILLKKNSIQRFLSDENINVSVITISDSFIRSLKSYILGNKDLLLWNCE-----HNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIFITDDLD--AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
5	HHPRED-l	3gbg_A	0.121	0.873	4.023	threading_5	---------------KKSFQTVYRMSKFDTYIFNNLYINDYKMFWIDSGIALIDKVSYEINSSSIILLKKNSIQRFSLDENINVSVITISDSFIRSLKSYILG---------LLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNS--IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
6	HHPRED-g	3gbg_A	0.109	0.873	3.696	threading_6	-------------KKSFQTNVYRMSKFD-TYIFNNLYINDYKMFWIDSGIALIDKVSYEINSSSIILLKKNSIQRFSLDENINVSVITISDSFIRSLKSYILG----------LLNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSI--FITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
7	SP3	3gbga	0.126	0.894	3.688	threading_7	--------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDVSYEINSSSIILLKKNSIQRFSLSDENINVSVIT----ISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIFITDDL--DAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
8	SAM-T99	2k9sA	0.340	0.364	3.077	threading_8	----------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRA--------------
9	MUSTER	2k9sA	0.330	0.375	1.359	threading_9	----------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE-----------
10	SPARKS	3ooua	0.304	0.360	2.285	threading_10	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SPIIQNVLSYITEHFSE-GSLKTLGNDFHINAVYLGQLFQKE-GEHFTDYLNRYRVNYAKEELLQTKDNLTIIAGKSGYTDA-YFYRQFKKHTGETPNRYRKIHQ-----------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.488 to 1xjaC SCOP code=b.82.4.1	TM-score=0.482 to 1d5yA SCOP code=a.4.1.8	TM-score=0.483 to 1xjaC SCOP code=b.82.4.1	TM-score=0.496 to 1xjaC SCOP code=b.82.4.1	TM-score=0.494 to 1xjaC SCOP code=b.82.4.1