Template-based Modeling Results for YIJE_ECOLI

Submitted Primary Sequence

>Length 301
MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTALRCIFGALVLFIVLLLRGRGMRPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILSGVSWGASAIVAKRLYARHPRVDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGSGIVLIVLALALVSRKKKEAVSVKRI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTALRCIFGALVLFIVLLLRGRGMRPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILSGVSWGASAIVAKRLYARHPRVDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGSGIVLIVLALALVSRKKKEAVSVKRI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTALRCIFGALVLFIVLLLRGRGMRPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILSGVSWGASAIVAKRLYARHPRVDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGSGIVLIVLALALVSRKKKEAVSVKRI
5543242111000000000000000000011002201100000000000000000000121222212101000000000000000001001100000100000000000000000001123122020000000000000001222221200100000000000000000002202232341210000000000000000000000233313110200000000000000000000110032021100000000100000000000012301002000000000000002233332222444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTALRCIFGALVLFIVLLLRGRGMRPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILSGVSWGASAIVAKRLYARHPRVDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGSGIVLIVLALALVSRKKKEAVSVKRI
1	MUSTER	3zuxA	0.109	0.947	1.057	threading_1	LSKISSFIGKTFSLWAALFAAAAFFA-----TFKWAGPY----IPWLLGIIMFGMGLTLKPSDFDILFKPKVVIIGVIAQFAIMPATAWCLSKLEIAVGVILVGCCPTASNVMTYLA-RGNVALSVAVTSVSTLTSPLLTPALMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGDAQKALTIEVGSGLAAALAAAHFAVVAVPGALFSVWHNISGSLLATYWAAKA------
2	SPARKS	2wjva	0.110	0.963	0.812	threading_2	PPGTGKTVTSATIVYHLAVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICVGAGDPRLAKMQFRPECMVPVVLGAKQLILVGDHCQLGPVVKAGLSQSLFERLVVALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLK----AGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQ-------EVEIASVDAFQGREKDFI
3	PROSPECT2	2bkuB2	0.093	0.930	1.659	threading_3	DENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA---------DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK------------PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDL
4	PPA-I	3g61A1	0.066	0.957	0.866	threading_4	FRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNS--------TNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHDVHDVGELNTRLTDDVSKINEGIGDKIG--MFFQAMATFFGGFIIVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTFTQAMMYFSYAACFRFGAYLVTQQLMT---
5	HHPRED-l	3b5d_A	0.152	0.329	3.378	threading_5	-----------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKFSE------------------------------G---F--T-RL--WPSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS---------
6	HHPRED-g	3b5d_A	0.152	0.329	3.446	threading_6	-----------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKF-S------------------------------EGFT-----RLW--PSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS---------
7	SP3	2ivna	0.056	0.947	0.697	threading_7	MLGTAH--------TLGIGIVSEDKVLANVFDTLTTEKHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFQGPGLGPALRVVATAARALAVKYRKPIV-GVNHCIAHVEITKMFGVKD----PVGLYVSGGNTQVLALEGGETLDIGIGNAIDVFARELLGFGGPKVEKLAEKGEKYIELPYAVMDLSFSGLLTEAIRKYRSG---KYRVEDLAYSFQETAFAALVEVTERAVAHTEKDVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCGAMIAYTGLRMYKAGISFRLEETIV
8	SAM-T99	3b61A	0.175	0.342	0.971	threading_8	------------------------------------------------------------------------------------------------------------------------------------------------------YIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIIC-------------------------YCASFWLLAQTLAYIPTGIAYAIWS---------------GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR--------
9	MUSTER	3g61A1	0.076	0.957	0.823	threading_9	FRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNS--------TNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHDVHDVGELNTRLTDDVSKINEGIGDKIG--MFFQAMATFFGGFIIVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFLTREQNAMKKAHVFGITFSFTQAMMY---YLVTQQLM
10	SPARKS	2gjka	0.118	0.987	0.785	threading_10	PPGTGKTVTSATIVYHLAVLVCAPSNIAVDQLTEKIHQTGLKVVRLCVSFLALHNQIRNMDSMPELQKLQQLKDESSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLASILIDEQATEPECMVPVVLGAKQLILVGDHCAGLSQSLFERLVVLGIMHPALSAFPSNSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLK----AGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYIASVDAFQGIILSCVRANEHQGIGFL

Predicted Tertiary Structure


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TM-score=0.431 to 1pv6A SCOP code=f.38.1.2	TM-score=0.431 to 1cpcB SCOP code=a.1.1.3	TM-score=0.431 to 1wp9A SCOP code=c.37.1.19	TM-score=0.766 to 3ea5B SCOP code=a.118.1.1	TM-score=0.426 to 1ijpA SCOP code=f.17.1.1