Template-based Modeling Results for YIID_ECOLI

Submitted Primary Sequence

>Length 329
MSQLPGLSRETRESIAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSQLPGLSRETRESIAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE
CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHEEECCCCCCHHHHCCCCCCCEEEEEEECCCEEEEEEEEEECCCCCEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEECCCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEEEEEEEEECCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSQLPGLSRETRESIAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE
55422122432431120010101313310230020012001222311212221223220100000223110000000012243301010000123124310011001000210342212200000122002002401111113212322121210000211222331134121012102002320110230202012113220000022211211310010000000010000000000022331202000020202012102231100021210210021024232020201010013321002010000002233223233223345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSQLPGLSRETRESIAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE
1	MUSTER	1t82B	0.338	0.432	1.300	threading_1	----------------------------------------------------------------------------------------------------------------------------------------------------------------------HHHHDELLNRLRQTWHSTIPVSEF-QIAPLSFTDGELSVSAPLAPNINLHHT-FAGSIYTITLTGWGVWLQQQLLN--VDGDIVLADAHIRYLAPVTSAPEVKVRWP--DTNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP---------------
2	SAM-T99	1q2yA	0.237	0.422	2.689	threading_2	-----------------MKAVIAKNEEQLKDAFYVREEVFVKEQNVPAEEEIDELENESEH-IVVYDGEKPVGAGRWRMK-DGYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGASGFILNAQTQAVPFYKKHGYRVLSKEFLD--AGIPHLQMMKD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	MUSTER	1q2yA	0.252	0.422	1.259	threading_3	----------------M-KAVIAKNEEQLKDAFYVREEVFVKEQNVPAEEEIDELENESEHIVVYD-GEKPVGAGRWRMK-DGYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGASGFILNAQTQAVPFYKKHGYRVLSEKFLDA--GIPHLQMMKD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4	SPARKS	1t82a	0.391	0.419	1.686	threading_4	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------DELLNRLRQTWHSTIPVSE-FQIAPLSFTDGELSVSAPLAPNINLHHT-FAGSIYTI-TLTGWGV-WLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPD--TNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP---------------
5	SPARKS	3efaa	0.127	0.432	1.565	threading_5	----------------NAKIIFSASPANRAAAYALRQAVFVEERGISADVEFDVKDTDQEYAVLYLQPDLPITTLRLEPQADHV-RFGRVCTRKAYRGHGWGRQLLTAAEEWATQRGFTHGEIHGELTAQRFYELCGYRVTAGPYDED--GAPVVIHKQLL------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	PROSPECT2	1t82A	0.391	0.419	2.080	threading_6	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------DELLNRLRQTWHSTIPVSE-FQIAPLSFTDGELSVSAPLAPNINLHHT-FAGSIYTI-TLTGWGV-WLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPD--TNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP---------------
7	PROSPECT2	2wpwA	0.145	0.839	2.007	threading_7	TAGE-------------LEFVPLAADETVGQWLDLALAAETGPRAAPVGSLRFAPPATALDDWVVRSGGRVVGALRLAPDGAPTARVDQLLVHPGRRRRGIGRALWAHARELARKHDRTTLTATVVESGPAQDPGPAAFAAAGAHRSDIPAGTHQWLDLDRHDPLADGVPAVP-----------------AGYSLVTW-----------GTITPDEYAVPVSELELRAAQEVRTSYARQFETRVGRGRGAVHDATTSVSKTTGNPAYALQGTLLKLANLEYVLRHEPEVRLVETANAEDNEPYDRWVFWTAE------------AGPSD
8	PPA-I	1t82B	0.338	0.432	2.664	threading_8	----------------------------------------------------------------------------------------------------------------------------------------------------------------------HHHHDELLNRLRQTWHSTIPVSEFQ-IAPLSFTDGELSVSAPLAPNINLHHT-FAGSIYTITLTGWGVWLQQQLLN--VDGDIVLADAHIRYLAPVTSAPEVKVRWPD--TNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP---------------
9	PPA-I	3efaA	0.127	0.432	2.657	threading_9	----------------NAKIIFSASPANRAAAYALRQAVFVEERGISADVEFDVKDTDQEYAVLYLQPDLPITTLRLEPQADH-VRFGRVCTRKAYRGHGWGRQLLTAAEEWATQRGFTHGEIHGELTAQRFYELCGYRVTAGPYDED--GAPVVIHKQLL------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	HHPRED-l	1t82_A	0.391	0.419	2.551	threading_10	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------DELLNRLRQTWHSTIPVSEF-QIAPLSFTDGELSVSAPLAPNINLHHT-FAGSIYTI-TLTGWG-VWLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPD--TNLSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP---------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.708 to 1t82B SCOP code=d.38.1.5	TM-score=0.703 to 1q2yA SCOP code=d.108.1.1	TM-score=0.705 to 1t82B SCOP code=d.38.1.5	TM-score=0.701 to 1q2yA SCOP code=d.108.1.1	TM-score=0.623 to 1q2yA SCOP code=d.108.1.1