Template-based Modeling Results for YIHI_ECOLI

Submitted Primary Sequence

>Length 169
MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGSRAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELLETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQEDMMRLLRGN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGSRAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELLETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQEDMMRLLRGN
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGSRAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELLETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQEDMMRLLRGN
5533333343413242444233312332333334435322221131122222322423323313321142201001234234443343333212231102113213201200210432330223112102110310120033010223444433333113201311334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGSRAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELLETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQEDMMRLLRGN
1	PROSPECT2	2rrlA	0.076	0.775	1.087	threading_1	HMASDDRATGPALTPLVVA-------------------AAATSAKVEVDSPPAPVTHGAAMPTLSSATAQP---------LPVASAPVLSAPLGSHEWQQTF-----SQQVMLFTRQGQSPHSHVRAALEAALPMLRTQLAESGIQSESFAGQQQSSSQQQ-----SSR
2	HHPRED-g	1vp7_A	0.167	0.355	1.204	threading_2	---------------------------------------------------------------------------------------ARPLPQDFETALAELEGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL----------------------
3	PROSPECT2	2jk8A1	0.099	0.959	1.011	threading_3	EIISPNTTTLKNKYGIKNLNAFLEKCSHDTAKAMINLREESLPEYFDTAYLCHIHQQLFKNTFEWAGYLRHIPFTFADGAMPEMKRTGWKNAFAIGDEIQEG-----LQRLDQTLAEKNNLQGLTREEFNSEAIELFNSLNQLHPF--REGNGRTQRLFFENLAKAAGH
4	HHPRED-g	2out_A	0.188	0.568	1.032	threading_4	------------------------------------------------------------------GSHMTFCVVVQNRIKSFHLGDNSLAAVSESQ-LAQLKADPRLVVQITESQEGGELSKEPQKQTDLTVEQLKAQLTERGITFKQ------SATKAELIALFAPA
5	PROSPECT2	2v6eA1	0.136	0.959	1.002	threading_5	VKIGEDASDRPQGDKTKKIKAAALKYKNALFNDKRKFRGKGLEKRISANTFNSYMSRARKRFDDRLHEKYP-------LYSEELSSWLSMPAASIRQHMSRLQAEAKINKLANKYPENSEDWKDKRDYLYKLFQQGSSLLEDLHLQLSSAERTSIQQRWANVLSEKKRN
6	MUSTER	3dmqA	0.175	0.947	0.741	threading_6	LNLGEIGEQDIEPLLQAANSDSEDAQSARQELVSLDRHGT---SRVLFRNTRNGVKGFPK----RELHTIKLPLPTQSGIGARKSAEDRARDLYPERIYQEFEGDNNFDPRVEWLGYLTSHRSQ--AKAATALQLEQVLREREGIRAAVFHEGSIIERDRAAAWFAEED
7	SPARKS	1jkjb2	0.153	0.964	0.662	threading_7	KCQVHAGGRGKAGGVKVVNSKEDIRAFAENGKRLVTYQTDANGQPVNQILVEAATDIAKEVVDR--SSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTMPYQGRELAFKL--G--LEGKLVQQFTKIFMGLATIFLERDLATKQGDDGNALFRQPDLREMRDQS
8	PROSPECT2	3ikmA2	0.117	0.959	0.995	threading_8	APGDPMDQEDLGPCSEEEEFQQDVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDDPA-WTPGPSLLSLQMRVTLVPGRRDNLAKLPTGTTLESAGVVCPYRAIESLYR------KHCLEQGKQQLMPQEPLALTARGGPKDTQPSYHHGNGPYLPKMEDGG
9	PPA-I	1vp7B	0.159	0.408	0.944	threading_9	------------------------------------------------------------------------------------QTDARPLPQDFETALAELESTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPLDPAALD----------------
10	HHPRED-l	1vp7_A	0.167	0.355	0.809	threading_10	---------------------------------------------------------------------------------------ARPLPQDFETALAELEGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL----------------------

Predicted Tertiary Structure


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TM-score=0.373 to 1udvA SCOP code=d.68.6.1	TM-score=0.394 to 2jr8A SCOP code=j.4.1.3	TM-score=0.597 to 2g03A SCOP code=a.265.1.1	TM-score=0.344 to 2hjqA SCOP code=a.140.3.2	TM-score=0.406 to 1keyB SCOP code=a.118.16.1