Template-based Modeling Results for YIGP_ECOLI

Submitted Primary Sequence

>Length 201
MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGFSTSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEAITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGFSTSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEAITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK
CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCEEEEECCCCCCCCEEEEECHHHHHHHHHCCCCHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGFSTSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEAITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK
431321011001100110022122012101412110010102202000000013310000132223110101010200020223221221132110202001300210120032020101200031001000100020021013102300330131012001210420112110110021012023003102321232335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGFSTSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEAITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK
1	SPARKS	1c44a	0.145	0.582	1.307	threading_1	SAGDGFKANLVFKEIEKKLEEE---GEQFVKKIGGIFAFKVKDGPATWVVDVKNGKGSVLPNSDKKADCTITMADSDLLALMTGKNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGKAKL---------------------------------------------------------------------------------
2	PROSPECT2	1t33A	0.086	0.806	1.070	threading_2	MNIEDLYLACAQWIADFLGEKFRPHAEKAERLFSQ----------------------------PAPDRDAIRELILLACKNMIMLLTQE-----------DTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCHIDLILHGLTQ
3	PPA-I	2qztB	0.156	0.542	1.248	threading_3	---SPGIRMSVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLEDMLAISGKTTVGDALKQGKIELSGDADLAAKLAEVI-----------------------------------------------------------------------------------------
4	PROSPECT2	2fnaA	0.109	1.000	1.063	threading_4	YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVLESFEQASKDNVIIVLDEAQELVKLRGVNLKRIKFGSEGLLYDYLRVEDPESPLFGRAFSTVESREEAIEFLRRGFQEIDFKDYEVVYEKIGPGWLTYFGFIYLDLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNWSDVKRALELESEIYNYLTQLTKH
5	HHPRED-l	3cnu_A	0.111	0.537	2.609	threading_5	MSEAKELI----KKMCDLQNSNEEIQKEMAGWS-GVVQYKLDG--EEFYVEYSDGTCEFKEGVHSSPTFTVVAPPDFWLAVLKGQDPVSGFMMGKYRIEGNIMEAQRLAGVIKKF--------------------------------------------------------------------------------------
6	MUSTER	2j69A	0.133	0.970	0.670	threading_6	YPL-TLLQKGIEIVLNDTEARNELSLGYVNNCHAILFVMRIKGRGLTVFFLVN--AWDQVRESLIDPDDELQASENRLRQVFNANLAEYCTVEGQ-VFELSSIQALRRRLKNPQADLDFMDSLNTFLTRERAIAELRQVRTLARLACNHTREAVARRIPLLEQDVNEL--KKRIDSVEPEFNKLTGIRDEFQKEIINTRDT
7	HHPRED-g	3cnu_A	0.111	0.537	2.272	threading_7	MSEAKELIKKM----CDLQNSNEEIQKEMAGWS-GVVQYKLDG--EEFYVEYSDGTCEFKEGVHSSPTFTVVAPPDFWLAVLKGQDPVSGFMMGKYRIEGNIMEAQRLAGVIKKF--------------------------------------------------------------------------------------
8	SP3	1c44a	0.154	0.582	1.147	threading_8	SAGDGFKANLVFKEIEKKLEEE---GEQFVKKIGGIFAFKVKDGEATWVVDVKNGKGSVLPNSDKKADCTITMADSDLLALMTGKNPQSAFFQGKLKITGNMGLAMKLQNLQLQPG---KAKL------------------------------------------------------------------------------
9	SAM-T99	1c44A	0.186	0.428	1.213	threading_9	--------------------------EQFVKKIGGIFAFKVKDGPATWVVDVKNGKGSVLPNSDKKADCTITMADSDLLALMTGKNPQSAFFQGKLKITGNMGLAMKLQNLQ-----------------------------------------------------------------------------------------
10	MUSTER	1b3uA	0.112	0.975	0.656	threading_10	DCRENVIMSQILPCIKELVSDNQHVKSALASVIMGLSPILGKDNTIEHLLPL----LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDLAIIEYMPLLAGQLGVELNSLCMAWLVDHVYAIREAATSNLKKLVEKFKEWAHATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEGQDITTKHMLPTVLR

Predicted Tertiary Structure


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TM-score=0.740 to 1c44A SCOP code=d.106.1.1	TM-score=0.765 to 1t33A SCOP code=a.4.1.9	TM-score=0.632 to 1pz4A SCOP code=d.106.1.1	TM-score=0.517 to 2fnaA SCOP code=a.4.5.11	TM-score=0.520 to 1iktA SCOP code=d.106.1.1