Template-based Modeling Results for YIGM_ECOLI

Submitted Primary Sequence

>Length 299
MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFLPFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIYDIMSKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKRLMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIGYFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVHRKWVAPRSSQTADDRRRDCALSE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFLPFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIYDIMSKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKRLMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIGYFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVHRKWVAPRSSQTADDRRRDCALSE
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFLPFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIYDIMSKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKRLMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIGYFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVHRKWVAPRSSQTADDRRRDCALSE
42110000000000010001000121010000001000000000000213202230001000000010000000001001102001000010000000000100023231200000000000000000102400210000000000010001001000220133230223100000000000000000011121320232212000000000000000100112000101100000010010000000000011221201000000000000000032101332232233444322235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFLPFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIYDIMSKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKRLMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIGYFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVHRKWVAPRSSQTADDRRRDCALSE
1	MUSTER	3zuxA	0.127	0.920	1.111	threading_1	I-FIGKTFSLWAALFAAAAFFAPDTF-KWAGPYIPWLLGIIMFGMGLTLKPSDFKHPKVVIIGVIAQFAIMPATAWCLSKLLEIAVGVILVGCCP-TASNVMTYLARGNVALSVAVTSVSTLTSPLLT-LAGEMQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTE--LTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAA-TGLPYDAQKALTIEVGMQSGLAAALAAAHFAAAP-VPGALFSVWHNISGSLLATYWAAKA----------------
2	SPARKS	3rcea	0.165	0.930	0.774	threading_2	TTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWW---YPSSYSLNFAM-IGLFGLYTLVFIFYLAIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFYMIWALIFISISILHLSGGAFMYETIMEVNTIDPEVFMQRISVLVFILSFIGFILL--CKDHKS------MLLALPMLALGFM---------ALRAGLRFTIYAVPVMALGFGYFLYAFKLSLRNKNILLILIAFFSISPALMHIYYYKSSTVFTSYKNKAQRE
3	PROSPECT2	3kb9A	0.066	0.960	1.566	threading_3	LPVIEAWPKLQETTRTWLLEK--RLMPADKVE-EYADGLCYTDLMAGYYLGAPDEVLQAIADYSAW-FFVWDDRHDRDIVHGRAGAWRRLRG----LLHTALDSPGDHLHHEDTLVAGFADSVR----RLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEELELRRLTFAHWIWTDLLEPSSGCDAVRKHPAYRALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVGKELSGAVRANVGNMRNWFSSVYWFHHESGRYMVDSWDDRSTPPYVNN
4	PPA-I	3zuxA	0.133	0.853	1.498	threading_4	YIPWLLGIIMFGMGLTLFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEML-EIQAAGMLMSIV-----------KMVLLPIVLGLIVHKVLG-------SKTEK----LTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKTGLPYDAQKALTIEVGMQSGLAAALAAAHFAAAPVFSVWHNISGSLLATYWAAKA---------------------
5	HHPRED-l	3b5d_A	0.141	0.331	1.278	threading_5	----------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKFSE-----------------------------GF-TR------LW--PSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPA-IIGMMLICAGVLIINLL----S---------------
6	HHPRED-g	3b5d_A	0.141	0.331	2.017	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKFSE-----------------------------GF-TR------LW--PSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPA-IIGMMLICAGVLIINLL----S---------------
7	SP3	3zuxa	0.125	0.940	0.490	threading_7	ISFIGKTFSLWAALFAAAAFFAPDTF-KWAGPYIPWLLGIIMFGMGLKPSDFDILFPKVVIIGVIAQFAIMPATAWCLSKLLNLAEIAVGVILVGCTASNVMTYLARGNVALSVAVTSVSTLTSPLLTMLAGMLEIQAAGMLMSIVKLLPIVLGLIVHKVLGSKTEK-LTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKTGLPYDAQKALTIEVGMQSGLAAALAAAHFAAAPVVPGALFSVWHNISGSLLATYW-----------AAKA-----
8	SAM-T99	3b61A	0.163	0.348	0.787	threading_8	-------------------------------------------------------------------LGGAILAEV----------------------------------------------IGTTLMKFSEG-----------------------FTRLWPS-----------------------------VGTIICYCASFWLLAQTLAYIPTGIAYAIW---------------SGVGIVLISLLSWGFFGQRLDLPAII-GMMLICAGVLIINLLSRSTPH--------------
9	MUSTER	3kb9A	0.091	0.923	0.814	threading_9	WPKLQETTRTWLLEKRLMPADKV----EEYADGLCYTDLMAGYYL-----GAPDEVLQAIADYSAWFFVWDDRHDRDIVH-----RAGAWRRLRGLLHTALDSP-GDHLHHEDTLVAGFADSV-----RLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPVEEYLELRRLTFAHWIWTDLLEPSSGCE--LPDKHPAYRRAALLSQEFAAWYNDLC-IAGDEVHNLGISLITHLAVERDALRFADELADGTAVRANVGNMRNWFSSVYWFHHESGRYMVDSWDDRSTPPYVNN
10	SPARKS	3gyya	0.127	0.739	0.770	threading_10	--------------------------DNWYAHEEVQDVFAQAFKGYVEDNDHTVQVIMEQTQNGILQFVNQ------SPGFTGIPSAQIFFILMPTDMDTVLEFFDESKA-INEMFPKLYAEHGLELLKM---------------YPE--------GEMVVTADEPITSPEDFN----KKIPLLAETYKAFGTPTPLP-----------WGEVYGGLQ-----TGI--IDGNPIFWIESGWFTTAMMANQDFYEGLSEEDQQLVQDAADAAYDHTIEHIKGLEKIKAASDEVTVTRLND

Predicted Tertiary Structure


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TM-score=0.428 to 2q7nB SCOP code=a.26.1.1	TM-score=0.393 to 1itfA SCOP code=a.26.1.3	TM-score=0.463 to 2nr4A SCOP code=b.45.1.4	TM-score=0.752 to 1hm7B SCOP code=a.128.1.4	TM-score=0.425 to 1wu3I SCOP code=a.26.1.3