Template-based Modeling Results for YIGA_ECOLI

Submitted Primary Sequence

>Length 235
MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVPHPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSLDDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQHYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLHEIALMLPELLERWIERV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVPHPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSLDDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQHYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLHEIALMLPELLERWIERV
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVPHPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSLDDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQHYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLHEIALMLPELLERWIERV
5543233233222312130003003400200230030032020212241100012111220231233024102300210130210021002001100202103200210230032020200001012332322122311210102210220112212332110011212101100231421000000101232100000000312211231200100210020022002311344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVPHPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSLDDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQHYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLHEIALMLPELLERWIERV
1	MUSTER	3e98A	0.238	0.732	1.900	threading_1	----------------------------------------------------VSLVERQVRLLRERNIERHRLSQLDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRH-QVPYVSLILFSDSSVSVGRS------VSSAEAHQAIGGLLSGGKTVCGVLRPHELAFLFGDRDEIGSAAVVSLSFQGLHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPRF----
2	SPARKS	3e98a	0.277	0.736	3.994	threading_2	--------------------------------------------------VSLVERQVRLLRERNI--ERHRLSQLDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHFQVPYVSLILFSDSSVSVGRS------VSSAEAHQAIGGLLSGGKTVCGVLRPHELAFLFGESDEIGSAAVVSLSFQGLHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPRF----
3	PROSPECT2	3e98A	0.272	0.736	2.314	threading_3	--------------------------------------------------VSLVERQVRLLRER--NIERHRLSQLDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHFQVPYVSLILFSDSSVSVGR------SVSSAEAHQAIGGLLSGGKTVCGVLRPHELAFLFGESDEIGSAAVVSLSFQGLHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPRF----
4	PPA-I	3e98A	0.243	0.736	3.426	threading_4	----------------------------------------------------VSLVERQVRLLRERNIERHRLSQLDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEQVPYVSLILFSDSSVSVGRS------VSSAEAHQAIGGLLSGGKTVCGVLRPHELAFLFGERDEIGSAAVVSLSFQGLHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPRF----
5	HHPRED-l	3e98_A	0.272	0.736	9.752	threading_5	--------------------------------------------------VSLVERQVRLLRERNIE-RHRLSQL-DVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHFQVPYVSLILFSDSSVSVG------RSVSSAEAHQAIGGLLSGGKTVCGVLRPHELAFLFGERDEIGSAAVVSLSFQGLHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPRF----
6	HHPRED-g	3e98_A	0.272	0.736	8.558	threading_6	--------------------------------------------------VSLVERQVRLLRERNIE-RHRLSQL-DVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLREFQVPYVSLILFSDSSVSVG------RSVSSAEAHQAIGGLLSGGKTVCGVLRPHELAFLFGERDEIGSAAVVSLSFQGLHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPRF----
7	SP3	3e98a	0.272	0.736	4.172	threading_7	--------------------------------------------------VSLVERQVRLLRERNI--ERHRLSQLDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLREFQVPYVSLILFSDSSVSVG------RSVSSAEAHQAIGGLLSGGKTVCGVLRPHELAFLFGERDEIGSAAVVSLSFQGLHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPRF----
8	SAM-T99	3e98A	0.272	0.736	5.963	threading_8	--------------------------------------------------VSLVERQVRLLRERN--IERHRLSQLDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHFQVPYVSLILFS------DSSVSVGRSVSSAEAHQAIGGLLSGGKTVCGVLRPHELAFLFGERDEIGSAAVVSLSFQGLHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPRF----
9	MUSTER	3mmhA	0.165	0.672	0.725	threading_9	-----------------------------------------------------------------------MHALHFSASDKAALYREVLPQIESVVAETDWVANLANTAAVLKEAGWFWVGFYLVDTRSDFQGPLACTRIPFGRGVCGQAWAKG---GTVVVGDVDAHP--DHIACSSLSRSEIVVPLFDGRCIGVLDADSEHLAQFDET-DALYLGELAKILEKRFEASRQAV
10	SPARKS	3mmha	0.167	0.689	0.994	threading_10	-----------------------------------------------------------------------MHALHFSASDKAALYREVLPQIESVVADTDWVANLANTAAVLKEAGWFWVGFYLVDTRSDVLAPFQGPLACTRIPFGRGVCGQAWAKGGTVV-VGDVDAHPDHIACSSLSRSEIVVPLFSDGCIGVLDADSEHLAQFDET-DALYLGELAKILEKRFEASRQAV

Predicted Tertiary Structure


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TM-score=0.583 to 1vhmB SCOP code=d.110.2.1	TM-score=0.586 to 1vhmB SCOP code=d.110.2.1	TM-score=0.591 to 1vhmB SCOP code=d.110.2.1	TM-score=0.589 to 1vhmB SCOP code=d.110.2.1	TM-score=0.591 to 1vhmB SCOP code=d.110.2.1