Template-based Modeling Results for YIFB_ECOLI

Submitted Primary Sequence

>Length 506
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYRAIDRLLIHLQKLLT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYRAIDRLLIHLQKLLT
CCEEEEEEEEEECCCEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCEEEEEECCCCCEEEECCCHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHCCEEEEECHHHCCHHHHHHHHHHHHCCEEEEEECCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYRAIDRLLIHLQKLLT
42101000100100300101010101511000000101321032013101000220213022210000001131333103100000000001123121330230100010002010110100000001024222200003212210021212100003201100000112211322222322242232112212123101100200011030000001331022000000130013122330010111221132322333123221311331001001112222101010000110000001012033300210220142110100112020201030000000111212123123030123002310230012003301000102312211123222313212102210110122113223301220223103310313230021021003212010100210010010003125232023300220021100220122024225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYRAIDRLLIHLQKLLT
1	MUSTER	1g8pA	0.256	0.595	1.521	threading_1	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPVFPFSAIVGQEDMKLALLLTAVGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG--------------------DLRPQLLDRFGLSVEVLSPRDVETRVEVIR-RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLVARTVEETL
2	SPARKS	3f8ta	0.167	0.804	2.160	threading_2	--------------------------------RIFGLPTRVLIEIVESFQRSLARVTSGKP---VVLDLDSDLASWIATHAREPALRELVRTVRGLPHRRVERIRPMDLISIEGVVREVGAERLEHAIV-DTGSELVAVRLHGH--RLGPGLRVEILGIVRSATLDALEVHKKDPIPEVHPDPAEADKDIAPLPGAEEVGKMLALQLFSCLHVLLAGYPVVCSEILHHVLDHLAP-----------RGVYVDLRRTE----------LTDLTAVLK--EDRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD----GIALNARCAVLAAINPGEPSDPPIARID------------LDQDFLSHFDLIAFLGVPS-------------YTLLRRYLLYAIREHPA--PELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDLETAMQ-------
3	HHPRED-l	3f9v_A	0.159	0.868	3.150	threading_3	TTFERINELVAYRKKS----LIIEFLSFNENLEIINNTKIILPILEGALYDHILQPTYQRDIEKVHVR--IVGIPRVIE-------------LRKIRSTDIKLITIDGILVKVTPVKE------RIYKATHPDQETICPKCGKPEVGLPRQLEIILEDDLVDSAR--PGDRVVIISDEKKIKDLAKDPWAPSIYGHWELKEALALALFGGVHILIIGDPGTAKSQMLQFISRVAPRAVY-----------TTGKGSTAAGLTAAVVR---------EKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISER--------PVSDNINLPPTILSRFDLIFILKDQPGEQDRELAKNIIDIDTLRKYIAYARKYV---TPKITSEAKNLITDFFVEMRKKSSE---TPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI--MRLFLESV---G-
4	SPARKS	1g8pa	0.258	0.591	3.707	threading_4	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPVFPFSAIVGQEDMKLALLLTAPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG--------------------DLRPQLLDRFGLSVEVLSPRDVETRVEVIR-RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL--RVARTVE
5	HHPRED-g	3f9v_A	0.180	0.836	2.986	threading_5	IELRKIRS-TDIG---KLITIDGIVTPVKERIYKAHPEEEVLEMPT-----ICPKCGFRIDWQKAVIQERPEEVPSGQ----LPRQL------EIILEDDLVDSARPGDVKVTGILDIKQDS------PVKRGRAVF---DIYMKVSSIEVSQKV--------------LDEVIISEEDEKKDLAKDPWIRSIYGHWELKEALALALFGGVHILIIGDPGTAKSQMLQFISRVAPRAVYT-----------TGKGSTAGLTAA-VVR---------EKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPV--------SDNINLPPTILSRFDLIFILKDQPGEQDLDVTKNIIDIDTLRKYIAYARKYVTPK---ITSEAKNLITDFFVEMRKKSS---ETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI--MRLFLESVG----
6	PROSPECT2	2x31G	0.236	0.595	2.763	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPVFPFSAIVGQEDMKLALLLTAVGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG--------------------DLRPQLLDRFGLSVEVLSPRDVETRVE-VIRRRDTYDADPKAFLEEWRPKDMDRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLRVAVEETLP
7	SP3	3f8ta	0.173	0.846	2.158	threading_7	FGLPTRVLIEIVRTESFQRSL-ARVTSGKPVLDLRELSDLASWIAVEPALRELVRTVAPDVEPRVRFRGLPHRFRRERIRPDGAL-ISIEGVVREVRGAERLEHAIVSELVAVRLHRLGPGLR-VEILGIVRSATLDALEVHKKDPIPEVHPD----PAELEEFRELADKDPL----------TTFARAIAPLPGAEEVGKMLALQLFSCLHVLLAGYPVVCSEILHHVLDHLAPRG----------VYVDL-----------RRTELTDLTAVLK--EDRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDG----IALNARCAVLAAINPGEPSDP----------PIARI--DLDQDFLSHFDLIAFLGVPS---------------YTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDLETAMQ-------
8	PPA-I	1g8pA	0.235	0.597	2.713	threading_8	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPVFPFSAIVGQEDMKLALLLTAPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG--------------------DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLRVARTVEET
9	HHPRED-l	1g8p_A	0.253	0.579	3.640	threading_9	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PVFPFSAIVGQEDMKLALLLTAVGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPLSTNVIRKPTPVVDLPLGVSEDRVVGGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGD--------------------LRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEE-WRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIAGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVLSHRLR------VEETL-
10	SPARKS	3f9va	0.145	0.925	2.087	threading_10	KYIERINELVAYRKKSLIIEFS-DVLSFNENLEIINNTKIILPILEGALYDHILQLDPTYQRDIEKVHVRIVGIPRVIELRKISTDIGLVKVTPMQEFEWPEDEEMPEVLEMPGQFRLIPEKRPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYVSQKVLDEVIISEIYGHWELKEALALALFGGIHILIIGDPGTAKSQMLQFISRVAPRAVY-----------TTGKGSTAAGLTAAVVREKGT---------GEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNI--------NLPPTILSRFDLIFILKDQPGEQDREDVHSGKSTKNIIDIDTLRKYIAYARKYKITSEAKNLITDFFVEMRKKSSETPDS---PILITPRQLEALIRISEAYAKMALKAEVTREDAERAI------NIMRLFLESVG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.754 to 1g8pA SCOP code=c.37.1.20	TM-score=0.761 to 1g8pA SCOP code=c.37.1.20	TM-score=0.531 to 1g8pA SCOP code=c.37.1.20	TM-score=0.527 to 1g8pA SCOP code=c.37.1.20	TM-score=0.754 to 1g8pA SCOP code=c.37.1.20