Template-based Modeling Results for YIDX_ECOLI

Submitted Primary Sequence

>Length 218
MKLNFKGFFKAAGLFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGTKGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVADDARFVLNAGKKKFTGTISLYYYWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEYYSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKLNFKGFFKAAGLFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGTKGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVADDARFVLNAGKKKFTGTISLYYYWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEYYSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCCCCCCCEEEEECCCCEEECCCCHHHHHHCCCCCCCCCEEEECCCEEEEEECCCCCEEEEEEEEEECCCHHHHHHHHHCCEECCCCCCCEEEEECCEEEECCCCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKLNFKGFFKAAGLFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGTKGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVADDARFVLNAGKKKFTGTISLYYYWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEYYSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ
55122300120000000000010000110023224222121102312000002033222230000002210100121022003002321124320201320201022244201010101022233311200231111022330120012020001334331311201212210202001122342233111000000000000000101000000135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKLNFKGFFKAAGLFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGTKGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVADDARFVLNAGKKKFTGTISLYYYWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEYYSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ
1	PPA-I	1zrtE	0.096	0.817	1.164	threading_1	-----RRDFLYHATAATGVVVTGAAVWPLINQMNASADV----KAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTSAENAN-------------------KPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHYDSAGRRKGPAPRNLDIPVAAFVDEIKLG------------
2	HHPRED-l	1kqf_A	0.112	0.775	1.140	threading_2	----------------------------------QARN--YKLLAKEIRNTLMYSLGDGREAIYIEGDPDH-PVSRGGAGLLDYV----NSENRLR--YPEYRA--PGSDKW---QRISWERIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMTQSLGANVVMVMGGNAHPVGNNNDATLVVTRTASVADITLSGLRYLIKINTN-
3	PPA-I	2r55A	0.081	0.789	1.079	threading_3	-------------FQSMAAQMSEAVAEKMLQYRRDTAGWKICREGNGVSVSWR--PSVEFPGNLYRGE---GIVYGTLEEVWDCVKPGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAM----------------KLISPRDFVDLVLVKRYEDGT------------ISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPPTKTNLVTFFH
4	HHPRED-l	2w7y_A	0.099	0.651	1.063	threading_4	---------------------------------------------EVLEFYHYHHSEH--SGVEFK-----PTPVNDLDI-NNKVASGE-FPDVIDLAGNAVSLAIE-QKLV--------LDLKPYIDSKLEKNNYQKDGKIYTHEQLFT-GLWYNKDIGAPWDDFTSIRKVYAFG-----A--GEP--SIRLFNTVLGGRKLLDSKLK--KEITIS-
5	HHPRED-l	2vpz_A	0.096	0.766	1.026	threading_5	--------------------------------AP-WYAQE----VKSVYQIVAHAVG---NRVYVEGYEANP-KSRGRQGAPQTT----YDPDRLK--RPLIRVEQRGEGKY---RVATWEEIAKKMLEIREKYGPEWGSPNAAKPCTWVFGRPIGGHIDWENAYIVGEDTHTQAKVVVRFSTAAAKAHRWLPIKPGALLLALIYEDIKGLFAYGIN-
6	MUSTER	1sezA	0.111	0.954	0.665	threading_6	SHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSHHSKRFGSVILGAIRSKLSKTSAN---KKRQRGSFSFLGGQTLTDAICK-DLREDELRLNSRLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVITAP------LCDVKSKIAKRGNPFLLNFIPEVDYVSVVITTFKRENVKYPLEGFGVLVPKTLGTLFSSFPNVYLYTTFVGG
7	SPARKS	3lica	0.114	0.927	0.635	threading_7	AQESSHSASRLQFLLEHAQANTQGLSDFIGLLADKDDINNPEKRNPDFFGSAIAFKPNTFPN---KKLFSPYVYSGSGFNYLDIGADGAINQVGGYWSKAITYAVPGVQPDYFGVTTVDLALDRPEQLGIAPSRLVVLDDQGRLIFKEKVLAGWLDKQNIKAFATLLNDGQA---GQASFVDDKGTVYLASVAEVARVVVVHELFASL----------
8	PROSPECT2	2r55A	0.069	0.794	0.990	threading_8	F----QSMAAQMSEAVAEKMLQYRR---------DTAGWKICREGNGVSVSWRPSVEFPGNLYRGEG-----IVYGTLEEVWDCVKPGGLRVKWDENVTGFEIIQSITDT----LCVSRTSTPS------------AAMKLISPRDFVDLVLVKRYEDGTI-----------SSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPPTKTNLVTFFHE
9	PPA-I	3lifA	0.074	0.931	0.915	threading_9	SETERNLSHSLAEHATHTFQGADVVLDDIVSFKWRPHPSPVFNNLPQLSDVAIL---DADGQLTYASVKPVPALDNSDRSYFRYHRANDDHTLLITGPIQVSRRLETTDGKFFGVVVATIESEYFSTFYKTFDLGSLLHSDGRLLIQWPSLQTGRDANVLFQKALPRSPDG----YYLTVSPFDGL--------TKYLAYRRVSRYPLVVTVARTEDS
10	HHPRED-l	1fft_B	0.103	0.665	0.995	threading_10	-------------------------SAAVGFRASNKDAKYSHNKVEAVVFLATALEDEKPITIEVVSMDWKWFFIYPEQATVNEIA-FPANTPYFKVTNSVRLHLIANEGTYDGIMKFKAIPDRAAFDQKAKQSPNTMSDMAAFAAPSEYNQVEYFSNPDLFADVINKFMA-----------------------------------------------

Predicted Tertiary Structure


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TM-score=0.621 to 1kb9E SCOP code=b.33.1.1	TM-score=0.314 to 1tuuA SCOP code=c.55.1.2	TM-score=0.734 to 1jssA SCOP code=d.129.3.2	TM-score=0.387 to 1xvxA SCOP code=c.94.1.1	TM-score=0.352 to 2v45A SCOP code=b.52.2.2