Template-based Modeling Results for YIDE_ECOLI

Submitted Primary Sequence

>Length 553
MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSYAMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSIG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSYAMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSIG
CCHHHHHHHHHHHHHHHHHHHCCEEECCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEEECCEEECCCCCCEECCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHCCCCHHHHCCCCCCCEEEEEEEECCEEECCCCCCEECCCCEEEEECCHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSYAMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSIG
4221010000000000000000102021000000000000000010112111212230220021000000000000200210021022211300000000000000000000200212111000000000110110000120143122223102100101000100000000000110322132313210222232323222212101010212313311031012122320000102133201112232102310000000122102201210133032222232221201100012331112303102133311000010012113011123120220000000023200320032012132312212000000000000000102020211211130011000000000001002203111101210020032000000000000300130021013131100100000010011000000010002020010000000020111001101312221200010000000001001000000000000215
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSYAMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSIG
1	MUSTER	1b3uA	0.096	0.920	0.884	threading_1	NEDVQLRLNSIKKLSTIALALGVERTRSELL-DEVLLALAEQLGTFTTLVGGPEYVHLLPPLESLATVTVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGFTSRTSACGLFSV-KAELRQYFRNLCSDRAAASKLGEFAKVLELDNVKSEIIPMFSNLADSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW------RVRYMVA--DKFTELQKAVGPEITKTDL-------VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVGLSPILGNTIEHLLPLFLAQLKDECPEVNLDCVNEVIGIRQLSQSLLPAI--VELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD------------EKLNSLCMAWLVDHVYAIR---EAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNLHRMTTLFCINVLSEVCGQDITTKHML---PTVLRMA----FNVAKSLQKIGPILDNSTLQSEVKPILEKLTVDVKYFAQEALTVL---LA
2	SPARKS	1vcta	0.131	0.331	1.400	threading_2	-----------------------------------------------------------------------------------------------------------------------------------------------YEPKSVKEIFIEMKDTVELMVDLAYASLL--------FGDKEIAEEVLELEERIDLLNYQLMMHSV------LAARNVKEAEQVIT---------------------ILQI-----ANAIEDISNAAGDLAKMVLEGVELHLEGEEIIGKIQVYESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFPNENFKIRAGDVLIGRGTRTSIDHLKEIAG----AIRVIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1jdha	0.088	0.797	1.969	threading_3	IPELTKLLVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ---------NTNDVETARCTAGTLHN----LSHHREGLLAIFKSGGIPALVKMLDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL--------VNIMRTYTYEKLLWTTSRVLKVLSVCSS--------NKPAIVEAGGMQALGLHLTDP-------------------------------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV---QLLGSDDINVVTCAAGILSNLTC-------------------------NNYKNKMMVCQALVRTVLRAGDREDITEPAICALRHL------TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH-------------WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-----SPIENIQRVAAGVLCELAEAIVATYAAAVLFRMS
4	PPA-I	2bkpA	0.084	0.345	1.411	threading_4	-------------------------------------------------------------------------------------YEPKSVKEIFIEMKDTVELMVDLAYASLLFG-DKEIAEEVLELEERIDLLNYQLMMHSVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEGVELHPVIKETILEGEE-----IIGKIQVYESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFPNENFKIRAGDVLIGRGTRTSIDHLKEIARGAIRVIG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	1vct_A	0.134	0.336	2.745	threading_5	--------------------------------------------------------------------------------------EPKSVKEIFIEMKD-TVELMVDLAYASLLFGDKEIAEEVLEL-----------EERID----------LL---------NYQ---LM-MHS-VLAAR-NV-KEAEQVI--------------------TIL-QIANAIEDI------------------------------------SNAAGDLAKMVLEGVELKETILEGEEIIGKIQVPESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFPNENFKIRAGDVLIGRGTRTSIDHLKEIARGAIRVIG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	3jxo_A	0.253	0.150	2.160	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NLYF-QGMIPLEQGIEFLSVNVEEDPVVGKKLKDLPLP--RDSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSAEAKETVEETLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	2xwub	0.096	0.980	0.572	threading_7	LQPDKVPEIQYFGASALHIKI---SRYWSDIPTDYESLKAQLFTQITRFA--SGSKIVLTRLCVALASLALSMM-PDAWPCAVADMVRL-FQAPVDGQGRCLALLELLTVLPEEFQTSPQYRKGLVRTSLAVGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVPLQDCEALIQAAFA-ALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNG-DMETSHGICRIAVALGENHSRA--LLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSYSQHTEALLYGFQSIAETIDVNIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALPELSVSSVSTLKKICREANIVAVSQDKTSQCMWLMQALGFLLSALQVEEILKNLHSLPYIQQLEKLAEEIPNPSNKLAIVHIISHPNPVVVVLQQVFQLIQKVLSKWAQVVEAVCAIFE
8	SAM-T99	2bkpA	0.147	0.246	1.702	threading_8	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KEIAEEVLE--LEER-IDLLNYQLMHSVLAARNVKEAEQ---------------------------------VITILQIANAIEDISNAAGDLETILEGEEIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFPNENFKIRAGDVLIGRGTRTSIDHLKEIA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3o7pA	0.141	0.720	0.801	threading_9	----RSYIIPFALLCSLFFLWA------VANNLNDILLPQFQQA------------------FQAGLIQSAFYFGY-IPIPAGILMKKLSKAGIITGLFLYALGAALFWPAAEIMNY-TLFLVGLFIIAAGLGCLETAANPFVTVLGPE----SSGHFRLNLAQTFASFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ--------------LSAYKHSLVLSVQTPYMII-----------------------------VAIVLLVALLIMLTKFPALQSDNHS------------------------------------------DAKQG-----------SFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVEIPGMTAANYLTGTMVCFFIGRFTGTW-----LISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALT---LCSAFMSIQYPTIFSLGIK--LGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDAAG-----NIPTA-------ELIPALCFAVIFIFARFR
10	SPARKS	1lnqa	0.146	0.483	1.280	threading_10	-------------------------------------------------------------------------------------------PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIASTPLGMYFTVTLIVLGIVAVERLLEFLRHVVICGWSESTLECLRELRGSEVFLAEDENVRKKVLRSGANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYEQLRMAGADQVISPFVI---SGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIPPRDYSFRAGDIILGIGKPEEIERLKNYISA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.846 to 1b3uA SCOP code=a.118.1.2	TM-score=0.561 to 2q6hA SCOP code=f.54.1.1	TM-score=0.532 to 2bkpA SCOP code=a.7.12.1	TM-score=0.623 to 1wa5B SCOP code=a.118.1.1	TM-score=0.606 to 2bkpA SCOP code=a.7.12.1