Template-based Modeling Results for YIBD_ECOLI

Submitted Primary Sequence

>Length 344
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCEEEEECCCEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
55432110000000110030031002000422131010000010022201200310143042010012221100101120012011100000101110231001100200242311000000010023333212212233232212121210010011123111000000011200231203022111011010001001202201002210000011331004233311210211210120020023013101210100120111001100200210333332221130002001100022002102001000000000010121121121112102111324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
1	MUSTER	3bcvA	0.295	0.552	1.860	threading_1	LI---PKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSDY---TYNVAQKYTCDAVFTF--KLYKNKNEIHTLLKDLIASD----------PYAREERAIQVSAKVVLYRRNLIEKKHLRFVSELPSEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
2	SPARKS	3bcva	0.284	0.552	3.247	threading_2	---LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSDYTYNVAQKY---TCDAVFTFKLYKNKNEIHTLLKDLIASD------------PYAREERAIQVSAKVVLYRRNLIEKKHLRFVSERISEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1xhbA1	0.142	0.817	2.897	threading_3	YPDNLPTTSVVIVFHNEWSTLLRTVHSVINRSPRHEEIVLVDDASERDFLPLESYVKKLKVPVHVIREQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDNWKLNFRWYPVPQREMDRRKGDRTLPMAGGLFSIDRDYFQEIGTYDAGMDIGENLEISFRIWQCGGTLEIVTCSHVGHVFG---------------------------------------------------------------QIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPRH
4	PPA-I	3bcvA	0.289	0.552	2.917	threading_4	---LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSDY---TYNVAQKYTCDAVFTFKLYKNKNEIHTLLKDLIASD------------PYAREERAIQVSAKVVLYRRNLIEKKHLRFVSERISEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	1xhb_A	0.145	0.884	3.902	threading_5	YPDNLPTTSVVIVFHNEASTLLRTVHSVINRSPRHMEIVLVDDASERDFLRPLESYVKKLKPVHVIREQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYFNWRWYPVPQREMDRRKGVRTPTMAGGLFSIDRDYFQEIGTYDAGMDGGENLEISFRIWQCGGTLEIVTCSHVGHVF--------------GQIINK---NNRRLAEVWMDEFKNFFYIIS-----------PGV-TKVDYGDISSRLG-LRRKLQCKPFSWYLENIYPD-SQIPRH---YFSLGEI---RNV--ETNQCLDN-
6	HHPRED-l	3bcv_A	0.309	0.517	3.944	threading_6	---LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSD-----YNVAQKYTCDAVFT----------------------FKLYKNKNEIHTLLKDLRAIQVSAKVVLYRRNLIEKKHLRFVSELPSEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
7	SP3	2z86a	0.144	0.988	2.500	threading_7	LI--IDGLSIVIPTYNRAKILAITLACLCNQTIYDYEVIVADDGSKENIEEIVREFE-SLLNIKYVRQKDYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPESVDWRIEHFKNTDNLRLSGGNVAFAKKWLFRAGW-FDEEFTHEDNEFGYRLYREGCYFRSVEGAMAYHQEPPQLLQQKVPYFYRKKEKIESATLIVRCVESATLRILQEHYIGSASNTAVRLAVELCLDEFRKDLSLYNWPIYSREKLTSAFTARAWNLTEGFNSNAVDYDMYLKLSELDIQKENHFKVVNESLSRL
8	SP3	3bcva	0.289	0.552	3.143	threading_8	LI---PKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSDYTYNVAQKY---TCDAVFTFKLYKNKNEIHTL---------LKDLIASDPYAREERA---IQVSAKVVLYRRNLIEKKHLRFVSELPSEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
9	SAM-T99	3bcvA	0.284	0.552	6.925	threading_9	L---IPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSDY---TYNVAQKYTCDAVFT--FKLYKN-----KNEIHTLLKDLIASDPYAREERAIQ-----VSAKVVLYRRNLIEKKHLRFVSERPSEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
10	SPARKS	2d7ia	0.135	0.904	2.501	threading_10	YLETLPNTSIIIPFHNEWSSLLRTVHSVLNRSPPEAEIVLVDDFSDREHLKPLEDYMALFPSVRILRKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMFDWEMYYKRIPIPPELQKADPSDPFESPVAVDRKWFWELG-GYDPGLEGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVS-------LARNLKRVAEVWMDEYAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPAAAWG-------------------------EIRNVG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.546 to 1h7qA SCOP code=c.68.1.1	TM-score=0.544 to 1h7qA SCOP code=c.68.1.1	TM-score=0.552 to 1h7qA SCOP code=c.68.1.1	TM-score=0.760 to 1xhbA SCOP code=b.42.2.1	TM-score=0.539 to 1h7qA SCOP code=c.68.1.1