Template-based Modeling Results for YIAV_ECOLI

Submitted Primary Sequence

>Length 378
MDLLIILTYVAFAWAMFKIFKIPVNKWTIPTAALGGIFIVSGLILLMNYNHPYTFKAQKAVISIPVVPQVTGVVIEVTDKKNTLIKKGEVLFRLDPTRYQARVDRLMADIVTAEHKQRALGAELDEMAANTQQAKATRDKFAKEYQRYARGSQAKVNPFSERDIDVARQNYLAQEASVKSSAAEQKQIQSQLDSLVLGEHSQIASLKAQLAEAKYNLEQTIVRAPSDGYVTQVLIRPGTYAASLPLRPVMVFIPDQKRQIVAQFRQNSLLRLAPGDDAEVVFNALPGKVFSGKLAAISPAVPGGAYQSTGTLQTLNTAPGSDGVIATIELDEHTDLSALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWVHYLYLDH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDLLIILTYVAFAWAMFKIFKIPVNKWTIPTAALGGIFIVSGLILLMNYNHPYTFKAQKAVISIPVVPQVTGVVIEVTDKKNTLIKKGEVLFRLDPTRYQARVDRLMADIVTAEHKQRALGAELDEMAANTQQAKATRDKFAKEYQRYARGSQAKVNPFSERDIDVARQNYLAQEASVKSSAAEQKQIQSQLDSLVLGEHSQIASLKAQLAEAKYNLEQTIVRAPSDGYVTQVLIRPGTYAASLPLRPVMVFIPDQKRQIVAQFRQNSLLRLAPGDDAEVVFNALPGKVFSGKLAAISPAVPGGAYQSTGTLQTLNTAPGSDGVIATIELDEHTDLSALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWVHYLYLDH
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEEEEEEEECCCCEEEEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEECCCCCEEECCCCCEEEEEEECCCEEEEEEECHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDLLIILTYVAFAWAMFKIFKIPVNKWTIPTAALGGIFIVSGLILLMNYNHPYTFKAQKAVISIPVVPQVTGVVIEVTDKKNTLIKKGEVLFRLDPTRYQARVDRLMADIVTAEHKQRALGAELDEMAANTQQAKATRDKFAKEYQRYARGSQAKVNPFSERDIDVARQNYLAQEASVKSSAAEQKQIQSQLDSLVLGEHSQIASLKAQLAEAKYNLEQTIVRAPSDGYVTQVLIRPGTYAASLPLRPVMVFIPDQKRQIVAQFRQNSLLRLAPGDDAEVVFNALPGKVFSGKLAAISPAVPGGAYQSTGTLQTLNTAPGSDGVIATIELDEHTDLSALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWVHYLYLDH
531110000000000002013011110000000000000000000001110210230101000020003110101101033222024110002003231111023011112212321321012022011102202111231031121112013252231123102202411211211031012113211221222121211201102110120112132020102020100101033111002222100000011321100010322002302312202000101222202010100131122212312121322210100100100010233332220230010100011331110000120000000100000244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDLLIILTYVAFAWAMFKIFKIPVNKWTIPTAALGGIFIVSGLILLMNYNHPYTFKAQKAVISIPVVPQVTGVVIEVTDKKNTLIKKGEVLFRLDPTRYQARVDRLMADIVTAEHKQRALGAELDEMAANTQQAKATRDKFAKEYQRYARGSQAKVNPFSERDIDVARQNYLAQEASVKSSAAEQKQIQSQLDSLVLGEHSQIASLKAQLAEAKYNLEQTIVRAPSDGYVTQVLIRPGTYAASLPLRPVMVFIPDQKRQIVAQFRQNSLLRLAPGDDAEVVFNALPGKVFSGKLAAISPAVPGGAYQSTGTLQTLNTAPGSDGVIATIELDEHTDLSALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWVHYLYLDH
1	MUSTER	3fppB	0.230	0.680	1.676	threading_1	------------------------------------------------RDLQQSVLKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID--------------PEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQT--QAVS--------------QQDLDNAATEMAVKQAQIG----TIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPT---------PEKVND-----AIFYYARFEVPNPNGL--LRLDMTAQVHIQLTDVK-----------------------
2	SPARKS	3fppa	0.208	0.698	4.062	threading_2	---------------------------------------------PGDLQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMEL--------------RAQRQQAEAELKLARVTYSRQQRL--AQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKR------------------NQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPT---------PEKVNDA-----IFYYARFEVPNPN--GLLRLDMTAQVHIQLTDVKNVLT-------------------
3	PROSPECT2	3fppA	0.207	0.677	3.231	threading_3	---------------------------------------------------PGDLQQSVLATKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLME--------------LRAQRQQAEAELKLARVTYSRQQRLAQT--QAVSQQDLDNAATEMAVKQAQIGTIDAQ------------------IKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPT---------PEKVNDA-------IFYYARFEVPNPNGLLRLDMTAQVHIQLTDVK---------------------NT
4	PPA-I	3fppB	0.208	0.685	2.522	threading_4	--------------------------------------------------RPGDLQKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID--------------PEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQT--QAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYT------------------RIVAPMAGEVTQITTLQGQTVIAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTPEKVNDA----------------IFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLT-------------------
5	HHPRED-l	3fpp_A	0.202	0.696	4.455	threading_5	---------------------------------------------PGDLQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQ--------------RQQAEAELKLARVTYSRQQRLAQT--QAVSQQDLDNAATEMAVKQAQIGTI------------------DAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTPEKVN--------------DAIFYYARFEVPNPN--GLLRLDMTAQVHIQLTDKNVLT--------------------
6	HHPRED-g	3fpp_A	0.207	0.690	4.532	threading_6	---------------------------------------------PGDLQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLME--------------LRAQRQQAEAELKLARVTYSRQQRLAQ--TQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRN------------------QASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVI--AAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTPEKVN--------------DAIFYYARFEVPNP--NGLLRLDMTAQVHIQLTDKNVLT--------------------
7	SP3	3fppa	0.205	0.698	3.869	threading_7	---------------------------------------------PGDLQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLME--------------LRAQRQQAEAELKLARVTYSRQQRL--AQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKR------------------NQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVL----------PTPEKVNDAIF----YYARFEVPNPN--GLLRLDMTAQVHIQLTDVKNVLT-------------------
8	SAM-T99	3fppB	0.233	0.624	4.429	threading_8	---------------------------------------------------------------VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLM--------------ELRAQRQQAEAELKLARVTYSRQQRL--AQTQAVSQQDLDNAATEMAVKQAQIGTI------------------DAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLP--------------TPEKVNDA--IFYYARFEVPNPNGLLRLDMTAQVHI-----------------------------
9	MUSTER	3lnnA	0.176	0.751	1.354	threading_9	----------AL-----RL-VVPAESPLRRTLAVAPAT----------ETVAAPFNAMIEADLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD-------------------------LAQANSDAAKARAAMTMARRNLDRQRELDKSE--IAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGH----------------ILAVRSPINGRVVDLNAATGAYWND-TTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDDP-QPGKVRYVGQ-------ILDAD--TRT-------TKVRMVFDNPD--GRLRPGMFAQATFLSQPHEGIVVPMSAIVQ-----TRAFVEV
10	SPARKS	3lnna	0.172	0.722	2.819	threading_10	-----------------------------------------ALRHEGERLVVPAESAMIEADLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD-------------------------LAQANSDAAKARAAMTMARRNLDRQREL--DKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGG----------------HILAVRSPINGRVVDLNAATGAYWND-TTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDDP-QPGKVRYVGQILDAD---------TRT-------TKVRMVFDNPDGR--LRPGMFAQATFLSQPHEGIVVPMSAIVQSGFY-TRAFVEV

Predicted Tertiary Structure


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TM-score=0.496 to 1iyuA SCOP code=b.84.1.1	TM-score=0.468 to 1kilE SCOP code=h.1.15.1	TM-score=0.487 to 1iyuA SCOP code=b.84.1.1	TM-score=0.484 to 1iyuA SCOP code=b.84.1.1	TM-score=0.490 to 1l8dA SCOP code=h.4.12.1