Template-based Modeling Results for YHJS_ECOLI

Submitted Primary Sequence

>Length 523
MRDIVDPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLANQTIASQAETAHVAVISMDSDPAKIFQLDDSQGPEKIKLFSMLNHEKGLYYLTRDLQCSIDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAEIQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRIPEPMRLLDDAVERSS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRDIVDPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLANQTIASQAETAHVAVISMDSDPAKIFQLDDSQGPEKIKLFSMLNHEKGLYYLTRDLQCSIDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAEIQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRIPEPMRLLDDAVERSS
CCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCEEEECCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEECCEEEEEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRDIVDPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLANQTIASQAETAHVAVISMDSDPAKIFQLDDSQGPEKIKLFSMLNHEKGLYYLTRDLQCSIDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAEIQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRIPEPMRLLDDAVERSS
5532231212000220122012021000000002223101000100011223202000001322022002113220122010010141330022003102211233210000000120132022320210023023003323000000010221220021011013001000002122210000000000331121311000112421101122322322242333100000100222230032010023021002203312000000003212201200210120034133201000112220021100100120001000013021120110011021231222023102100211222313110212100200120042111122130000002102102021002002122201000001210000000010200110041002010120023200013213000101203321233222212223222222323332312221121010233223445
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRDIVDPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLANQTIASQAETAHVAVISMDSDPAKIFQLDDSQGPEKIKLFSMLNHEKGLYYLTRDLQCSIDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAEIQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRIPEPMRLLDDAVERSS
1	SPARKS	1tf7a	0.111	0.807	1.275	threading_1	--EHQAAKMRTMIEGF-DDISHLPIGRSTLVSGTSGTGKTLFSIQFLYNIEFDEPGVFVTFEETPQDIIKNARSFGWDKLFILDASPGGFDLSALIERINYAIQKYRARRVSIVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVEMCGGG--FFKD------------------SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSW----GMD---------------FEEMERQNLLKIVCAYPES-------------AGLEDHLQIIKSEINDF----------------------------KP----ARIAIDS--LSALARGVSNNAFRQFVIGVTGY-AKQ--EEITGLF--------TNTSDQFMGAHSITDSHISTITDTIIYVEIRGEMSRAI-NVFKMRGSWHDKAI
2	PROSPECT2	2z5lA	0.127	0.769	1.337	threading_2	S-----------------PTDAWKALGRCLLVAPPTTDGELLLTTVLSERGASVARLEVPIGARRAEVAELLKPAGEENTTVVSLVPSTDAVRALLQAVSDIGVPAARVWALTRAVAVVPGETPQDAGAQLWGFGRVAALEDIWGGLIDLPENRRALELAAAVLAGRDGEDQVAVRASGIYGRRVSRAAAAGA--------------------------ASWQPSGTVLIT----GGMGAI---------GRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELR---GHGCEVVHAACDVAERDALAALVTAYPPNAVFHTTLSPESFETVRGAVCG----------AELLHQLTADIKGLDAFAANAALDALAERRRA----AGLPATSVAWGLWGGGGMAAGAGEESLSRRG-------------LRAMDPDAAVDALLGAMGRN------DVCVTVVDVDWERFAPATNAIRPGRLFDTVPEAREA-----------------------------LT
3	PPA-I	3dvlA	0.096	0.874	1.209	threading_3	-EHQAIAKMRTMIEGF-DDISHLPIGRSTLVSGTSGTGKTLFSIQFLYNIEFDEPGVFVTFEETPQDIIKNARSFGWGKLFILDASPGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVS-------------------SGVVRLDEMCGGKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSW------------GMDFEEMERQNLLKIVCAYPESAGLEIKSEINDFKPAALARGVSNNAFRQFVIGVTG-YAKQEEITGLFTNTSDQFMGAH----SITDSHIITDQYVEIRGEMSRAINVFKMRGSW--------------HDKAIREFMDKGPDI-KDSFRNFERIISGSPTRITVDEKSELSRIVRGVQEKGPES-------------
4	HHPRED-g	2w0m_A	0.101	0.380	1.249	threading_4	----MVSRLSTGILDFDKLIQGIPQGFFIALTGEPGTGKTIFSLHFIAKLRDGDPCIYVTTEESRDSIIRQAKQFNFEKLIIIDLVLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL-FLDKPAMARKISYYLKRVLNKWNFTIYATSQ------------GVEHVADGIIRFRRRNGELHRYILIEKMRQTDHDKHVWEIDIVNGGIVLKGREE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	2fr0A	0.132	0.784	1.329	threading_5	--DEVSALRPTGAGE------PARLDGTWLVAKYAGTADETSAREALESAGARVRELVVDARCGRDELAERLRSVGEVAGVLSLLAVDEADTLSLVQAMVSAELGCPLWTVTESAVATGPFERRNAAHGALWGVGRVIALENPGGLVDVPAGSVAELARHLAAVVSGGAGEDQLALRADGVYGRR------------------------WVRAAAPATDDEWKPTGTVLVT----GGTGGV---------GGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELE---ALGARTTVAACDVTDRESVRELLGGIGDDAVFHAALTGERIERASRAVLG----------ARNLHELTRELDLTGYAPGNAYLDGLAQQRRS----DGLPATAVAWGTWAGSGMAEGPVADRFRRHG-------------VIEMPPETACRALQNALDRAEVCPIVIDV----------RWDRFLLAYTAQRPTR----------------------------LFDEIDDARR
6	HHPRED-g	1tf7_A	0.103	0.820	1.248	threading_6	EHQAIAKM-RTMIEGFDDISHGLPIGRSTLVSGTSGTGKTLFSIQFLYNIEFDEPGVFVTFEETPQDIIKNARSFGWDKLFILDDPVGGFDLSALIEYAIQKYR--ARRVSIDSVTSVFQQYASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLGRTLEILKL---RGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNV-------------------RVSSGVDEMCGGGFFKDSIILATG-ATGTGKTLLVSRFENACANKERAILFAYEESRAQLLRNAYSWMERQNLLKIVCAYAGLEDHQIIKSEINDFKPARIAIDSLSALARG---------VSNNAFRQFVIGVTGY-AKQEEITGLFTNTSDQF--MGAHSIT------DSHISTITDTIILINVFKMRGSWHDK---AIREFMI----------SDKG-PDI-KDSFRNFERIISGSPTRI-----------------------------------
7	PROSPECT2	1w25A	0.116	0.742	1.305	threading_7	SA--------------------------RILVVDDIEANVRLLEAKLTAEYYEVSTA-----MDGPTALAMAARDLPDIILLDVMMPGMDGF-TVCRKLKDDPTTRHIPVVLITA-----LDGRGDRIQGLES---------GASDFLTKPIDDVMLFARVRSLTRFKLVIDELR---------------------------QREASGRRMGVIAGAAARLDGLGGRVLIVAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVK----ALEIGVNDILSRPIDPQELSARVKTQIQRK------RYTDYLRNNLDHSLELAVTDQRYMTGQLDSLVKRAT-LGGDPVSALLID-IDFFKKALRLASNV--RAIDLPCYGGEEFVVIMPDTALADALRIAERI------------------------RMHVS------------------------GSPFTVAHGREMLNVTGEGDTAAH
8	HHPRED-g	2dr3_A	0.103	0.390	1.197	threading_8	------RRVKTGIPGVDEILHGIPERNVVLLSGGPGTGKTIFSQQFLWNGLMGEPGIYVALEEHPVQVRQNMAQFGWDVVDAFTALTDIREFIEVLRQAIRDIN--AKRVV-VDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVS----GFG--PGVEHGVDGIIRLDLIDGELKRSLIVWKMRGTSHSMRRHPFDITDKGIIVYPDKVLKR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	PROSPECT2	1foha	0.098	0.881	1.295	threading_9	RSTKVYNGQADGLQGLADKILSEDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERHILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSDHESTPLFHSNLQTQEEEDANYRLPEGKCKYVIGCDGGHSWVRRTL--------GFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMII-------PRENNLVRFY--------------VQLQFTPEVVIANAKKITAYHIGQRVTEKMDTYNLGWKLGLVLTGRAK---------RDILKTYEEERHAF------------AQALIDFDHQF-SRLFSGRPAKD----------VADEMGVSMDVFKEAFVKGNEFASGTAINYDEN-LVTDKKSSKQELAKNCVVGTRFKSQPVVRHSRIIVFAGKATDATQMSRIKKFSENSVISLYTPKITIHSCHRDDIEMHDFPAPALHPKWQYDFIYADCDSWHHPHPKSGILVEPKEKSGAQTEADWTKS
10	HHPRED-g	2ehv_A	0.103	0.371	1.116	threading_10	-----VRRVKSGIPGFDELIGGFPEGTTVLLTGGTGTGKTTFAAQFIKGAEEGEPGVFVTLEERARDLRRE-ASFGWDKIAIVD---NVDNFLRYIYRVVKA--INAKRLVIDSIPSIALRLEERKIREVLLKLNTILLE-GVTTILTTEAP---LSRYG--IEEFIARGVIVLDLQEIELKRYVLIRK-RETRHS-KKYPFEIGPNGIVVYP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.537 to 1pznA SCOP code=a.60.4.1	TM-score=0.536 to 1pznA SCOP code=a.60.4.1	TM-score=0.631 to 2fr0A SCOP code=c.2.1.2	TM-score=0.536 to 1pznA SCOP code=a.60.4.1	TM-score=0.533 to 1pznA SCOP code=a.60.4.1