Template-based Modeling Results for YHJA_ECOLI

Submitted Primary Sequence

>Length 465
MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKTQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKTQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKTQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ
432112110000000000100100000011342143222322222323300000233101101111030100020100320022003201520213211111233332232102101101223211122000011103123311120121123232312112321232232213201441221231120001011122102312010010012311111123001002122012102100001001221121202101221101121222212321320021033133012101301332120310020002002101222121021131233111221220020033330120110111112112211123112113121112121212323312232202001001100111241302102000200231212330133102100100210222223324345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKTQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ
1	MUSTER	3o5cA	0.445	0.624	2.073	threading_1	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPIEVITPAKITEPEKVELGKMLFFEPRLSKSGFISCNSCHNLSTGGVDALPTSIGHHWQEGPINSPTVLNADFMLAQFWDGRASNLKEQAAGPIANPKEMGF-THELATETIASMPAYRARFAKVYGDEVDIDRLTDAIAAFEKTLVTPNSPFDQYLLGKQDAISGDAKAGYQLFKDKGCVSCHNGPAVGGTMFMKMGLIKPFHT---NNPAEGRKGVTGKDADKFVFKVPTLRNIELTYPYFHDGSVWTLEEAVNTMADIQLGQKLTEKETKEMVAFLNSLTGEQPQISL-PI
2	SPARKS	1iqca	0.459	0.628	6.711	threading_2	------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANEPIQPIKAVTPENADMAELGKMLFFDPRLSKSGFISCNSCHNLSMGGTDNITTSIGHKWQQGPINAPTVLNSSMNLAQFWDGRAKDLKEQAAGPIANPKEMAS-THEIAEKVVASMPQYRERFKKVFGDEVTIDRITTAIAQFEETLVTPGSKFDKWLEGDKNALNQDELEGYNLFKGSGCVQCHNGPAVGGSSYQKMGVFKPYETKNP---AAGRMDVTGNEADRNVFKVPTLRNIELTYPYFHDGGAATLEQAVETMGRIQLNREFNKDEVSKIVAFLKTLTGDQPDFKL-PI
3	PROSPECT2	3o5cA	0.443	0.626	3.636	threading_3	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPIEVITPAKITEPEKVELGKMLFFEPRLSKSGFISCNSCHNLSTGGVDALPTSIGHHWQEGPINSPTVLNADFMLAQFWDGRASNLKEQAAGPIANPKEMGF-THELATETIASMPAYRARFAKVYGEKVDIDRLTDAIAAFEKTLVTPNSPFDQYLLGKQDAISGDAKAGYQLFKDKGCVSCHNGPAVGGTMFMKMGLIKPFHTNN---PAEGRKGVTGKDADKFVFKVPTLRNIELTYPYFHDGSVWTLEEAVNTMADIQLGQKLTEKETKEMVAFLNSLTGEQPQISLATG
4	PPA-I	3o5cA	0.443	0.626	3.106	threading_4	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPIEVITPAKITEPEKVELGKMLFFEPRLSKSGFISCNSCHNLSTGGVDALPTSIGHHWQEGPINSPTVLNADFMLAQFWDGRASNLKEQAAGPIANPKEMGF-THELATETIASMPAYRARFAKVYGDEVDIDRLTDAIAAFEKTLVTPNSPFDQYLLGKQDAISGDAKAGYQLFKDKGCVSCHNGPAVGGTMFMKMGLIKPFHTN---NPAEGRKGVTGKDADKFVFKVPTLRNIELTYPYFHDGSVWTLEEAVNTMADIQLGQKLTEKETKEMVAFLNSLTGEQPQISLPIL
5	HHPRED-l	2c1v_A	0.393	0.684	5.084	threading_5	-------------------------------------------------------------------------------------------------------------------------------------------------AIDNGALREEAKGVFEAIPEKMTAIKQTEDNPEGVPLTAEKIELGKVLFFDPRMSSSGLISCQTCHNVGLGGVDGLPTSIGHGWQKGPRNAPTMLNAIFNAAQFWDGRAADLAEQAKGPVQAGVEMSN-TPDQVVKTINSMPEYVEAFKAAFPEEVTFDNFAAAIEQFEATLITPNSAFDRFLAGDDAAMTDQEKRGLQAFMETGCTACHYGVNFGGQDYHPFGLIAKPGAEVLPAGDTGRFEVTRTTDDEYVFRAAPLRNVALTAPYFHSGVVWELAEAVKIMSSAQIGTELTDQQAEDITAFLGTLTGEQPVIDHPI-
6	HHPRED-g	3hq9_A	0.435	0.628	4.491	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------------------AD-ELQQLFKPVPAAPTLKGNPASPVKVELGKMLYFDPRLSASHLISCNTCHNVGLGGGDLQATSTGHGWQKGPRNAPTVLNSVFNTAQFWDGRAKDLAEQAKGPVQAPVEMNN-TPDQVVKTLNSIPDYVALFKKAFPDPVTFDNMAKAIEVFEATLITPDSPFDQYLKGKKKALDGKQTAGLKLFLDKGCVACHGGLNLGGTGYFPFGVVE------------GRFAVTNTAKDEYVFRAPSLRNVAITYPYFHSGVVWSLKEAVAVMGSAQFGIKLSDDESEAIAAFLGSLTGKQPKVMPAPR
7	SP3	1iqca	0.461	0.630	5.975	threading_7	------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANEPIQPIKAVTPENADMAELGKMLFFDPRLSKSGFISCNSCHNLSMGGTDNITTSIGHKWQQGPINAPTVLNSSMNLAQFWDGRAKDLKEQAAGPIANPKEMAS-THEIAEKVVASMPQYRERFKKVFGDEVTIDRITTAIAQFEETLVTPGSKFDKWLEGDKNALNQDELEGYNLFKGSGCVQCHNGPAVGGSSYQKMGVFKPYETKNP---AAGRMDVTGNEADRNVFKVPTLRNIELTYPYFHDGGAATLEQAVETMGRIQLNREFNKDEVSKIVAFLKTLTGDQPDFTPRSQ
8	SAM-T99	1iqcA	0.457	0.630	4.726	threading_8	------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANEPIQPIKAVTPENADMAELGKMLFFDPRLSKSGFISCNSCHNLSMGGTDNITTSIGHKWQQGPINAPTVLNSSMNLAQFWDGRAKDLKEQAAGPIANPKEMAS-THEIAEKVVASMPQYRERFKKVFGSDVTIDRITTAIAQFEETLVTPGSKFDKWLEGDKNALNQDELEGYNLFKGSGCVQCHNGPAVGGSSYQKMGVFKPYETKNP---AAGRMDVTGNEADRNVFKVPTLRNIELTYPYFHDGGAATLEQAVETMGRIQLNREFNKDEVSKIVAFLKTLTGDQPDFKLPIL
9	MUSTER	2c1vA	0.387	0.684	2.009	threading_9	-----------------------------------------------------------------------------------------------------------------------------------------AID-------NGALREEAKGVFEA-IPEKMTAIKQTEDNPEGVPLTAEKIELGKVLFFDPRMSSSGLISCQTCHNVGLGGVDGLPTSIGHGWQKGPRNAPTMLNAIFNAAQFWDGRAADLAEQAKGPVQAGVEMSN-TPDQVVKTINSMPEYVEAFKAAFPDPVTFDNFAAAIEQFEATLITPNSAFDRFLAGDDAAMTDQEKRGLQAFMETGCTACHYGVNFGGQDYHPFGLIAKPGAEVLPAGDTGRFEVTRTTDDEYVFRAAPLRNVALTAPYFHSGVVWELAEAVKIMSSAQIGTELTDQQAEDITAFLGTLTGEQP-VIDHPI
10	SPARKS	3pxsa	0.338	0.604	4.961	threading_10	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADDALAALGAQLFVDPALSRNATQSCATCHDPARAFTDPREGKAGLGQSHGDRNTPTLGYAAYKGGQFWDGRADDLKQQAGQPMLNPVEMAMPDRAAVAARLRDDPAYRTGFEALFGKGRAFDAAAEALAAYQATFSPFDSKYDRVMRGEE-KFTPLEEFGYTVFITWNCRLCHMQETFTNFEYHNIGLPVNESGLGADHVDHGLLARPGDPAQSGRFKVPSLRNVAVTGPYMHNGVFTDLRTAILFYNKYQSGLMLDDGRVDALVAFLETLTDRRYEPLLE--

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.782 to 1iqcA SCOP code=a.3.1.5	TM-score=0.803 to 2vhdA SCOP code=a.3.1.5	TM-score=0.788 to 1iqcA SCOP code=a.3.1.5	TM-score=0.775 to 1iqcA SCOP code=a.3.1.5	TM-score=0.784 to 1iqcA SCOP code=a.3.1.5