Template-based Modeling Results for YHIM_ECOLI

Submitted Primary Sequence

>Length 350
MNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTLFPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLGLTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSILEAGSAKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTLFPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLGLTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSILEAGSAKK
CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHCCHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTLFPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLGLTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSILEAGSAKK
54121000130000000000000000002121213100001000000000000001001001200300120031001000000000010100001113311022000000000000000000100322110000022122132321223021222121222221221111101010122223112100000000000000000000001002203221223332111210110011002201100012322251010000000000000000100000100122021223021010000000100000001122122100000100100010000000002012223244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTLFPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLGLTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSILEAGSAKK
1	PROSPECT2	1xm9A	0.090	0.923	1.527	threading_1	DESAKQQVYQGICKLVDLAAGALRNLVFRSTTNKLETRRQNGIREAVSLLAEIQKQLTGLLWNLSSTKEELIADALPVLADREVFFNATGCLRNLSSADAGRQTMRNYS-----GLIDSLMAYVQNCV----------AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARL-----LQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL---AKQYFSSSM----LNNIINLCRSSASPK
2	PPA-I	3zuxA	0.106	0.834	1.164	threading_2	LSKISSFIGKTFSLWAALFAAA--AFFA---PDTFKWAGPYIPWLLGIIMFGMGLTDILFKHPKVVIIGVIAQFAIPATAWCLSKLLAEIAVGVILCPGGTASNVMT--YLARGNVALSVAVTSVS----------------------------------------TLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGA---VVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTG--LPYDAQK-ALTIEVGMQNSGLAAALAAAHFAAAVVAVPGALFSVWHNISGSLLATYWAAKA-----
3	PROSPECT2	1jdha	0.092	0.960	1.485	threading_3	SPQMVSAIVRTMDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLVKFLAITTDCLQILAYGNQESKLIILASGGPEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMPSQRLVQNCLWTLRNLS----------DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVEDITEPAICALRHLTSRHQEAEM----AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAS
4	PPA-I	3dh4A	0.103	0.917	1.058	threading_4	LETILGIPLMYSILGLALFALVYSIVVWTDVIQV-------FFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANA-DKAYPWLTQFLPVGVKGVVF-----AALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVLIIACLIAPML-----GGIGQAFQYIQEYTGL-VSPGILAVFLLGLFWK-------KTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTL---LFTMVVIAFTSLSTSINDDD
5	PROSPECT2	3a6pA1	0.076	0.934	1.438	threading_5	KTQVAIVRHFGLQILEHVVVMELIANGTLNILEEENHIQGETQTELVMFILLRLAEDVVRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQAN-------CRVGVAALNTLA---------------GYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHQFLRSSTQMTWGALFR-HEILSRDPLLLAIIPKYLRASMTNLSKTDSPSCEYSRFDFDSDEDFNAFFNAGEWLKYQLSTF
6	PPA-I	1kpkA	0.150	0.951	1.042	threading_6	TPLAILFMAAVVGTLVGLAAVAFDAWLQNQRMGALVHTADNLLTVAFLCSAVLAMFGYFLVRKYIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLLDIFRLKGDEARHTLLATGAAAGLAAAF---------------NAPLAGFIIEEMRPQFRYTLISIKAVFIGVIMSTVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLE--AGTFAIAGLAASIAPLTGIILVLEMTDNYQ
7	PROSPECT2	1ejlI	0.092	0.931	1.432	threading_7	VNWSVEDIVKGILESQLQATQAARKLLSREKQPPDNIIRAGLIPKFVSFLSPIQFESAWALTNIASGTSEQTKAVVDGGAIPASEQAVWALGNIAGDGSAFRDLVIKHGAILACGYLRNLTWTLSNLC-----------RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIVTPALRAIGNIVTGTDEQTQKVIDSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV---------NHGLVPFLVGVLKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLVILDAISNIFQAAEKLGETEKLSIMIEECGG----LDKIEALQRHENESS
8	PROSPECT2	1ezva	0.104	0.909	1.410	threading_8	YNNGVSNLWKNISKENSAVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLV----VADLESFANNHFLNSNAVVVGESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYF---------------VAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDS-------GLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVT-DTEVERAKSLLKLQLGQLYESGN-----PVNDANLLGAEVLILGEAFKKIDASMMRW
9	MUSTER	1kpkA	0.156	0.934	0.709	threading_9	TPLAILFMAAVVGTLVGLAAVAFDAWLQNQRMGALVHTADNLLTVAFLCSAVLAMFGYFLVRKYASGIPEIEGALRWPVKFFGGLGTLGGGMVL-------PTVQIGGNIMVLHTLLATGAAAGLAAAFNFIIEEM----RPQFRYTLISIKA----VFIGV-IMSTIMYRIFNVALIDVGKLSAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCG---LLGFVAPATSGGGFNLIPMGMLVFIFVARVITTLLCFSSGAPGGIFAP-MLALGTVLGTAFGMVAVELFPQYHLE-AGTFAIAGLAASI-PLTGIILVLE-DNYQL
10	SPARKS	1pw4a	0.119	0.963	0.835	threading_10	MGSVSDRSNPRVFLPAGLILAAAVMLFMWATSSIAVMFV--LLFLCGWFQGMGWPPCGRTMVHWWQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY----MPAFCAILVALFAFAMMRD----TPQSCGLPPIEEYKNDTAKQIFMQYVLPNKLYIAIANVFVYLLRYGILDWSPTYLKALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR-GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM--ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQ

Predicted Tertiary Structure


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TM-score=0.468 to 2q6hA SCOP code=f.54.1.1	TM-score=0.828 to 1xm9A SCOP code=a.118.1.24	TM-score=0.406 to 1j30A SCOP code=a.25.1.1	TM-score=0.678 to 1wa5B SCOP code=a.118.1.1	TM-score=0.466 to 2q6hA SCOP code=f.54.1.1