Template-based Modeling Results for YHII_ECOLI

Submitted Primary Sequence

>Length 355
MDKSKRHLAWWVVGLLAVAAIVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGKFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDKSKRHLAWWVVGLLAVAAIVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGKFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEEECCCCCEECCCCCEEEEEECCCEEEEEECCHHHHHCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDKSKRHLAWWVVGLLAVAAIVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGKFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ
5543443111000000000000000002111123220001010201101000311010110104222203321100201232012112201111320121012021213222110310222023121112201311210221143211023102212210210221121022101102211321322123022202102110220011132120101320101111023011012112000001122010001021310220321120200010023120201000002202111421322321120001020201232233323202110001010203332312331224235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDKSKRHLAWWVVGLLAVAAIVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGKFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ
1	MUSTER	3fppB	0.172	0.735	2.057	threading_1	---------------------------RPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID---------------------PEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVS---------------------QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPT------PEKVND-----AIFYYARFEVPNPN---GLLRLDMTAQVHIQLTDVKN-----------
2	SPARKS	3fppa	0.206	0.738	4.576	threading_2	-----------------------------PGDLQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLME---------------------LRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKR---------------------NQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPT------PEKVNDA-----IFYYARFEVPNPN---GLLRLDMTAQVHIQLTDVKNVLT--------
3	PROSPECT2	3fppA	0.195	0.738	3.571	threading_3	PGD-----------------------------LQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLM---------------------ELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQ---------------------IKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTPE-----KVNDAIFYYARFEVP---------NPNGLLRLDMTAQVHIQLTDVKN--------VLT
4	PPA-I	3fppB	0.167	0.744	2.932	threading_4	---------------------------RPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID---------------------PEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVS---------------------QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPT------PEKVNDA---IFYYARFEVP-----NPNGLLRLDMTAQVHIQLTDVKNVLT--------
5	HHPRED-l	3fpp_A	0.192	0.732	4.452	threading_5	-----------------------------PGDLQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQA---------------------EAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIG---------------------TIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTPEKVNDA---------IFYYARFEVPN-----PNGLLRLDMTAQVHIQLTDVKNV----------
6	HHPRED-g	3fpp_A	0.203	0.735	4.507	threading_6	------------------------------PGDLQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLME---------------------LRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQ---------------------IKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTP------EKVNDA-----IFYYARFEVPNP---NGLLRLDMTAQVHIQLTDVKNV-----LT---
7	SP3	3fppa	0.206	0.738	3.738	threading_7	-----------------------------PGDLQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMEL---------------------RAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKR---------------------NQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPT------PEKVNDA-----IFYYARFEVPNPN---GLLRLDMTAQVHIQLTDVKNVLT--------
8	SAM-T99	3fppB	0.198	0.713	4.779	threading_8	----------------------------RPGDLQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQR---------------------QQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTI---------------------DAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTPE---------KVNDAIFYYARFEVPNPN-----GLLRLDMTAQVHI------------------
9	MUSTER	3lnnA	0.180	0.766	1.512	threading_9	VPAES--PLRRTLAVAPAT----------RETVAAPFNLPAMIEADLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD--------------------------------LAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGG-------------------HILAVRSPINGRVVDLNAATGAYWNDTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDD-PQPGKVRYVGQI-------DADTR-------TTKVRMVFDNPD---GRLRPGMFAQATFLSQPHE--PMSAIVQSGF
10	SPARKS	3lnna	0.182	0.758	3.215	threading_10	VPAESPLRRTLAVAPAT------------RETVAAPFNLPAMIEADLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD--------------------------------LAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGG-------------------HILAVRSPINGRVVDLNAATGAYWNDTTSLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDDP-QPGKVRYVGQIL------DADTRT-------TKVRMVFDNPD---GRLRPGMFAQATFLSQPHE------GIVVPM

Predicted Tertiary Structure


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TM-score=0.494 to 1iyuA SCOP code=b.84.1.1	TM-score=0.495 to 1iyuA SCOP code=b.84.1.1	TM-score=0.492 to 1iyuA SCOP code=b.84.1.1	TM-score=0.465 to 1gjxA SCOP code=b.84.1.1	TM-score=0.489 to 1iyuA SCOP code=b.84.1.1