Template-based Modeling Results for YHFS_ECOLI

Submitted Primary Sequence

>Length 361
MKTFPLQSLTIIEAQQKQFALVDSICRHFPGSEFLTGGDLGLTPGLNQPRVTQRVEQVLADAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYPTTRVIIEQMGLTLITVDFNDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATLRAAGVPALTDDNYAVMKVARIGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRATLYSGGSQIQGAQALEVLRGLVFAPVMHAVQAGVSERLLALLNGGAVPEVKSAVIANAQSKVLIVEFHQPIAARVLEEAQKRGALPYPVGAESKYEIPPLFYRLSGTFRQANPQSEHCAIRINPNRSGEETVLRILRESIASI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKTFPLQSLTIIEAQQKQFALVDSICRHFPGSEFLTGGDLGLTPGLNQPRVTQRVEQVLADAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYPTTRVIIEQMGLTLITVDFNDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATLRAAGVPALTDDNYAVMKVARIGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRATLYSGGSQIQGAQALEVLRGLVFAPVMHAVQAGVSERLLALLNGGAVPEVKSAVIANAQSKVLIVEFHQPIAARVLEEAQKRGALPYPVGAESKYEIPPLFYRLSGTFRQANPQSEHCAIRINPNRSGEETVLRILRESIASI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCEECCCCCCHHCEEEECCCCCCHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTFPLQSLTIIEAQQKQFALVDSICRHFPGSEFLTGGDLGLTPGLNQPRVTQRVEQVLADAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYPTTRVIIEQMGLTLITVDFNDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATLRAAGVPALTDDNYAVMKVARIGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRATLYSGGSQIQGAQALEVLRGLVFAPVMHAVQAGVSERLLALLNGGAVPEVKSAVIANAQSKVLIVEFHQPIAARVLEEAQKRGALPYPVGAESKYEIPPLFYRLSGTFRQANPQSEHCAIRINPNRSGEETVLRILRESIASI
5552213212222022211100210031021221121111000111211301210120002023121000000000000000000003300100001010120011002201020000112012001300343221000002024213211000100100431100000000200121131003000000000002002220100000112002201101210103010010000020000010011110110220021022221230321112413110000103231012002102411112122203122200110010001112223303300010012232131003103200343
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKTFPLQSLTIIEAQQKQFALVDSICRHFPGSEFLTGGDLGLTPGLNQPRVTQRVEQVLADAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYPTTRVIIEQMGLTLITVDFNDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATLRAAGVPALTDDNYAVMKVARIGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRATLYSGGSQIQGAQALEVLRGLVFAPVMHAVQAGVSERLLALLNGGAVPEVKSAVIANAQSKVLIVEFHQPIAARVLEEAQKRGALPYPVGAESKYEIPPLFYRLSGTFRQANPQSEHCAIRINPNRSGEETVLRILRESIASI
1	MUSTER	1pg8A	0.210	0.950	1.706	threading_1	ALVPPVY-----QTATFTFPTVEYGAACFAGEQ-----AGHFYSRISNP-TLNLLEARMASLEGG-EAGLALASGMGAITSTLWTLLRPGDEVLLGN-TLYGCTFAFLHHGGVKLRHVDMADLQALEAAMTPAT--RVIYFESPANPNMHMDIAGVAKIARKHGATVVVDNTYCTPYLQR-PLELGADLVVHSATKYLSGHGAGIVVGSQALVDRIRLQGLKTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQ--PQVELIGLASFPQYMIAFELKIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEEAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS
2	SPARKS	3acza	0.149	0.947	4.714	threading_2	SHAYPIF-----QTSTFCFDSTQQGADLFMGKG-----EGHIYSRLGN-PTVEQFEEMVCSI-EGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGD-TLYGCTVSLFTHWLIEVDLIDTSDVEKVKAAWKPN--TKMVYLESPANPTCKVDIKGIAVVCHERGARLVVDATFTSPCFLK-PLELGADIALHSVS-YINGHGGGVSSATAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQH--EKIVKVNHAKKQMSTFLFEMKSEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPNIMRKQGITPELVRISVGIENVDDIIADLKQALELW
3	PROSPECT2	1qgna	0.175	0.964	3.069	threading_3	KYASFLNSDGSVAIHAYFFNKTSELIDFKEKR-----RASFEYGRYGNPTT-VVLEEKISALEGAE-STLLMASGMCASTVMLLALVPAGGHIVTTT-DCYRKTRIFIEKMGITATVIDPADVGALELALNQKK-VNLFFTESPTNPFLRCDIELVSKLCHEKGALVCIDGTFATPLNQK-ALALGADLVLHSATKFLGGHNAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAH--PKVRHVYYPGLQSHAVSFEVDGDL-LTTAKFVDALKIAPSFGGCESIVDQPIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI
4	PPA-I	1qgnA	0.165	0.972	3.442	threading_4	GIVTDAITTPVVNTSAYFFNKTSELIDFKEK-----RRASFEYGRYGN-PTTVVLEEKISALE-GAESTLLMASGMCASTVMLLALVPAGGHIVTTT-DCYRKTRIFIETIGITATVIDPADVGALELALNQK-KVNLFFTESPTNPFLRCDIELVSKLCHEKGALVCIDGTFATPLNQK-ALALGADLVLHSATKFLGGHNAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPYPGLQSHPIAKKQMTAVSFEVDGLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI
5	HHPRED-l	1qgn_A	0.165	0.956	2.375	threading_5	AITTPVV-----NTSAYFFNKTSELIDFKEKRRA----SF-EYGRYGNP-TTVVLEEKISALEGAESTLL-MASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFA-TPLNQKALALGADLVLHSATKFLGGHNAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAH--PKVRHVYYPGLQSHAVSFEVDGDTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDS-
6	HHPRED-g	1gc0_A	0.206	0.875	2.937	threading_6	QDHGGALVPPVYQTATFTFP--------------------------SNPTLN-LLEARMASLE-GGEAGLALASGMGAITSTLWTLLRPGDEVLL-GNTLYGCTFAFLGEFGVKLRHVDMADLQALEAAMTPAT--RVIYFESPANPNMHMDIAGVAKIARKHGATVVVDNTYCTPYLQR-PLELGADLVVHSAT-YLSGHGAGIVVGSQALVDRIRGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQHYP------------GMIAFELKGGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS
7	SP3	3acza	0.150	0.958	5.017	threading_7	PKGDHVLAYPIFQTSTFCFDSTQQGADLFMGKG-----EGHIYSRLGN-PTVEQFEEMVCSI-EGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGD-TLYGCTVSLFTHWLIEVDLIDTSDVEKVKAAWKPN--TKMVYLESPANPTCKVDIKGIAVVCHERGARLVVDATFTSPCFLK-PLELGADIALHSVS-YINGHGGGVSSATAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQH--EKIVKVNHAKKQMTTFLFEMKSEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPNIMRKQGITPELVRISVGIENVDDIIADLKQALE-L
8	SAM-T99	1t3iA	0.155	0.945	2.683	threading_8	INGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANV--GAHQLSVRATDA-YEAVRNKVAKFINAREIVYTRNA-TEAINLVAYSWLKAGDEIITHHSNLVPWQM-VAAKTGAVLKFVQLDDLEHFKTLL-SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVF-----FDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNY---------EVELTHYLWQGLGQIPQLRLYGPNPKHLASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSAR
9	MUSTER	1ibjA	0.174	0.922	1.687	threading_9	MST-PL-YQTAT----------------FKQPSA-IENGPYDYTRSGNP-TRDALESLLAKLDKA-DRAFCFTSGMAALSAVTHL-IKNGEEIVAGD-DVYGGSDRLLSQVGVVVKRVNTTKLDEVAAAIGPQT--KLVWLESPTNPRQQIDIRKISEMAHAQGALVLVDNSIMSPVLSR-PLELGADIVMHSATKFIAGHSAGVLAVKEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSH--PRVKKVYLHFSQAKVFSFITGSVLSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVEARGLTEDLVRISAGIEDVDDLISDLDIAFKTF
10	SPARKS	3ndna	0.194	0.942	4.595	threading_10	ETAEAMY-----LTSGYVYGSAAVAEKSFAGEL-----DHYVYSRYGN-PTVSVFEERLRLIE-GAPAAFATASGMAAVFTSLGALLGAGDRLVAAR-SLFGSCFVVCSEILVQTVFVDGDDLSQWERALSVPT--QAVFFETPSNPMQSLDIAAVTELAHAAGAKVVLDNVFATPLLQQ-GFPLGVDVVVYSGT-HIDGQGGGAILGDREYIGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGH--PSVRWVRYAKRQMSVVTFALDCQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGEGRAAIGLGDGVVRISVGLEDTDDLIADIDRALS--

Predicted Tertiary Structure


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TM-score=0.883 to 1pg8A SCOP code=c.67.1.3	TM-score=0.875 to 1qgnA SCOP code=c.67.1.3	TM-score=0.871 to 1e5eA SCOP code=c.67.1.3	TM-score=0.868 to 1qgnA SCOP code=c.67.1.3	TM-score=0.900 to 1qgnA SCOP code=c.67.1.3