Template-based Modeling Results for YHDJ_ECOLI

Submitted Primary Sequence

>Length 294
MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLFTIKSRIVWSYDSSGVQAKKHYGSMYEPILMMVKDAKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSEVDPDLITK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLFTIKSRIVWSYDSSGVQAKKHYGSMYEPILMMVKDAKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSEVDPDLITK
CCCCCCCCEECCCCCEEEECCHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHCCCCCCHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLFTIKSRIVWSYDSSGVQAKKHYGSMYEPILMMVKDAKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSEVDPDLITK
554213222113311000000001004403331000000100110133131223213121002001300110130034300000001120010010003311101010111222111312331121222111003113211110211112021113322132221122222232110000101213221332321223212200220010003321100000000000000012121200001022300300130022123222320231344322312222302322232234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLFTIKSRIVWSYDSSGVQAKKHYGSMYEPILMMVKDAKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSEVDPDLITK
1	MUSTER	1nw8A	0.290	0.891	2.331	threading_1	----------GTTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMPADWDDHMD-----YIGWAKRWLAEAERVLSPTGSIAIFGGLQYSIISHMRQNSKMLLANLIIWNYPNGMSA-QRFFANRHEEIAWFAKT-KKYFFDLDAVREPYDEETKAAYMKDKRLNPESVEKGRNPTNVWRMSRLNGNSLERVGHPTQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQR-SYEIVEGAAN--FGAALQRG------------
2	SPARKS	1g60a	0.287	0.806	4.701	threading_2	----------MLEINKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFD--SHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKR---------WFPNPNGRLCGEVWHFSTPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ------------------------------------
3	PROSPECT2	1g60a	0.291	0.806	3.618	threading_3	ML----------EINKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFD--SHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKSKNHTFNYDE---------VRVPYESTDRIKHASEKGILKNGKRWFPNPNGRLCGEVWHFSTPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN------------------------------------Q
4	PPA-I	1g60A	0.287	0.806	2.608	threading_4	----------MLEINKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKAD--WDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKSKNHTFNYDEVRV---------PYESTDRIKHASEKGILKNGKRWFPNPNGRLCGEVWHFSTPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ------------------------------------
5	HHPRED-l	1g60_A	0.328	0.789	5.400	threading_5	----------MLEINKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADW--DSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVKGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKSKNH-TFNYDEVRVPYESTDRIKGILKNGKRWFPNPNGRLCGEVWHFS-------------TPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ------------------------------------
6	HHPRED-g	1g60_A	0.332	0.789	5.340	threading_6	----------MLEINKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADW--DSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQLVSKGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKS-KNHTFNYDEVRVPYESTDRIKEKGINGKRWFPNPNGRLCGEVWHFS-------------TPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ------------------------------------
7	SP3	1g60a	0.287	0.806	4.541	threading_7	----------MLEINKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKAD--WDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKSKNHTFNYDEVRV---------PYESTDRIKHASEKGILKNGKRWFPNPNGRLCGEVWHFSTPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ------------------------------------
8	SAM-T99	1g60A	0.320	0.786	5.645	threading_8	----------MLEINKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSK--ADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNAFICQYLVSKGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKS-KNHTFNYDEVRVPYESTDRIKHASEKGILKNPNPNGRLCGEVW--------------FSTPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ------------------------------------
9	MUSTER	1g60A	0.312	0.806	2.289	threading_9	ML----------EINKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKAD--WDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNAFICQYLVSKGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKS-KNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNPNG--------RLCGEVWHFSTPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ------------------------------------
10	SPARKS	1booa	0.195	0.908	4.591	threading_10	--NFGKKPAYTTSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKE--YGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGYNFRVLIRMIDEGFFLAEDFYWFNPSKLPSPIEWV------------NKRKIRVKDAVNTVWWFSKTEWPKSDITKVLASIPPNLLQISNSESNGQYLANLMGIKAHPARFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD-NNISEEKITDIYNRLNGESLDLNSI----------

Predicted Tertiary Structure


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TM-score=0.915 to 1nw8A SCOP code=c.66.1.11	TM-score=0.908 to 1nw8A SCOP code=c.66.1.11	TM-score=0.851 to 1g60A SCOP code=c.66.1.11	TM-score=0.848 to 1g60A SCOP code=c.66.1.11	TM-score=0.883 to 1g60A SCOP code=c.66.1.11