Template-based Modeling Results for YHCM_ECOLI

Submitted Primary Sequence

>Length 375
MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSTPPAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSTPPAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCEEEEEHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSTPPAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG
554211222122004322133132022002202200320141222234222222321311233332432212100000011201100000002102234421110020002003101212332100210022023302000001010120000100000020003210000000111122014311212201100300230010010222111212222313112021233021101300220122343322202023020102112320000001200322221110110032020000110121142131102100100110042201000002021220122331112021002102421233113333234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSTPPAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG
1	SPARKS	2w58a	0.196	0.477	1.582	threading_1	IQSMFMPREILRA-SLSDVDNDDGRIKAIRFAERFVAEY--------------------------EPGKKMKGLYLHGSFGVGKTYLLAAIANEL-AKRNVSSLI----VYVPELFRELKHSQT-MNEKLDYIKK-VPVLMLDDLGAESWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTYSQKAARIMERIRYLAYPIEITGP-NRR-----------------------------------------------------------------------------------------------------------------------------------------------------------------
2	PROSPECT2	1w36B1	0.115	1.000	1.204	threading_2	MSDVAEAALYLRLLLGLGGSAAAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKNAFESGMLFEQQLIEDESLLRYQACADFWRRAPPPDIRDLVITRALAEIRETVAREKRRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWNKLFSQQALRFVFKGMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRISVLVRSRQEAAQVRDALTLLYLSNRDRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVAVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGERTCIEALCDDD
3	HHPRED-l	2w58_A	0.158	0.456	1.810	threading_3	SMFMPR--EILRASLSDVDLNDDGRIKAIRFAERFVAEY--------------------------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRSSLIVYVPELFRELKHS--------QTMNEKL-DYIKKVPVLMLDDLGAE-WVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH----KVKAARIMERIRYLAYPIEITGP-NRR-----------------------------------------------------------------------------------------------------------------------------------------------------------------
4	PROSPECT2	3a6pA1	0.085	0.944	1.152	threading_4	AMDQVNALCVKAVTVMMDPNSTQRYRLEALKCVPCGLRLAEKTQSRLEKVYLKNSVMELIANGTLNILEEENEMIKREWPQHWPD-MLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPRIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALN--TLAGYIDWVSMSHITAENCKLLEILCLLGAAECLLIAVSRKGKLEDRKPLMVLQTADGGGLVEKHYVFLKRLCQVLCDSDVETPSNFG------------------KYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDYSRFDFDSDEDFFFNSSRAQQGEVMRGEWLKYQLSTF
5	HHPRED-g	2w58_A	0.169	0.459	2.295	threading_5	SMFMPR--EILRASLSDVDLNDDGRIKAIRFAERFVAEY---------------------E-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRSSLIVYVPELFRELKHS--------QTMNEKLDYIK-KVPVLMLDDLGA-SWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH---KVKAARIMERIRYLAYPIEITG-PNRR-----------------------------------------------------------------------------------------------------------------------------------------------------------------
6	SPARKS	1l8qa	0.119	0.808	1.125	threading_6	-DFLNP------KYTLENFIVGEGNRLAYEVVKEALE----------------------------NLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS--ADDFAQAVEHLKKGT----INEFRNYKSVDLLLLDDVQFGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL--DGVS----DRLVSRFEGG-ILVEIELDNKTRFKIIKELKEFNLELRKEVIDYLLENVREIEGKLKGFEGLERKERKERDKLQIVEFVANYKVEDILSDKRNKR--TSEARKIAYLCRK---VCSASLIEIARAF--------KRKDHTTVIHAIRSVEEEKKRKFKHLVGFLEKQAFDKIC-----------
7	SP3	2w58a	0.194	0.480	1.565	threading_7	IQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEY--------------------------EPGKKMKGLYLHGSFGVGKTYLLAAIANEL-AKRNVSSLIV-YVPELFRELKHSQTMNEKLDYIKK-----VPVLMLDDLGAESWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTYSQKAARIMERIRYLAYPIEITGP-NRR-----------------------------------------------------------------------------------------------------------------------------------------------------------------
8	PROSPECT2	2fnaA	0.108	0.787	1.146	threading_8	LFDTSPKDNRKDFFDR---------EKEIEKLKG----------------------------------LRAPITLVLGLRRTGKSSIIKIGINELNLEERNYISYKDFLLELQKEINKLVKRLPSL---LKALKNIQGIVIGNEIKFNRLSFANLLESFEQA--SKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFISGSEGLLYDYLRVEDPESPLFGPFSREEAIEFLRRGFQEADIDFKDYEVV--------------------YEKIGGIPGWLTYFGFIYLDNK------------NLDFAINQTLEYAKKLILKEFENFLHGREIARKRYSKCGKWSDVKRALELEEDSEIYNYLTQLTKHS
9	SAM-T99	2qgzA	0.209	0.395	1.207	threading_9	VNNASRMEAFSAILDFVEQYPSAEQ----------------------------------------------KGLYLYGDMGIGKSYLLAAMAHELSGVSTTLLHFPSFAIDVKNAISKEE-----------DAVKNVPVLILD-----DIGAVRVLQVILQYRMLEELPTFFTSNYSFADLERWAWQAKRVMERVRYLAREFHLEGANRR---------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	HHPRED-l	2ce7_A	0.144	0.779	1.808	threading_10	---YKPS-------GNKRVTFKDGAEEAIEELKEVVEFLKD---P------------SKFNR---IGARMPKGILLVGPPGTGKTLLARAVAGEANVPFF-HISGSDFV-------ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGREQTLNQLLVEMDKEGIIVMAATNRPPALLRPGRFDKKIVVDRKKILEIHTRNKPLAEDVNLEIIAKRTP--GFVGISPAEIIAYHEAGHAVVSPNGEPVHRISII------------KYLVSRNELLDKTSGAANDIERATEMV---------LRNYSEEVAEEVKKIVTNCYERAKEIIRKYR-------------KQLDNIVEILLEKET-----------

Predicted Tertiary Structure


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TM-score=0.618 to 1l8qA SCOP code=a.4.12.2	TM-score=0.555 to 1w36E SCOP code=c.37.1.19	TM-score=0.611 to 1l8qA SCOP code=a.4.12.2	TM-score=0.563 to 1ialA SCOP code=a.118.1.1	TM-score=0.613 to 1l8qA SCOP code=a.4.12.2