Template-based Modeling Results for YHBW_ECOLI


  Submitted Primary Sequence

>Length 335
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
55333110000000102422113200210010021034220200000100102110000000000000220120000000000211000100110000120030101000011112232001113221211122012101200211324223220101113233020000001220020013211100001111131012002101210341332332200000000012234102200210120012122122131112221123212221120012112100011222013002200420301100000210223111200200120033125
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
1MUSTER3fgcA0.1760.9852.473threading_1-----MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAEDVNLLDQMSKGRFRFGICRGLYDKDFRVFGTDMDNSRAMDCWYDLMKEGFNEGHIKFPKIQLNPSAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYVTKIDHCLSYITSVDHDSNRAKDICRNFLGHWYDSYVNATKIFDDSDQTKGYDFNKGQWRRIDYSYEINPVGTPEECIAIIQQDIDATGIDNICCGFEAGSEEEIIASMKLFQSDVPYLKE
2SPARKS2wgka0.1760.9854.665threading_2----AMETGLIFHPYMRPGRSARQTFDWGIKSAVQADSVGIDSMMISEHASQIWENIPNPELLIAAAALQTKNIKFAPMAHLLPHQHPAKLATMIGWLSQILEGRYFLGIGAGAYPQASYMHGIRNETKNLNDMVRESLFIMEKIWKREPQHKLADFSPWGGKAPEIAVTGFSYPSMRLAGERNFKPV-SIFSGLDALKRHWEVYSEAAIEAGHPDRSRHAVSHTVFCADTDKEAKRLVMEGPIGYCFERYLIPRFGMMDGYAKDAGIDPVDADLEFLVDNVFLVGSPDTVTEKINALFEATGGWGTLQVDYYDDPAPWFQSLELISEVAPKILL
3PROSPECT22wgkA0.1700.9853.660threading_3----AMETGLIFHPYMRPGRSARQTFDWGIKSAVQADSVGIDSMMISEHASQIWENIPNPELLIAAAALQTKNIKFAPMAHLLPHQHPAKLATMIGWLSQILEGRYFLGIGAGAYPQASYMHGIRNAGQSLNDMVRESLFIMEKIWLEDEQHKLADFSPWGGKAPEIAVTGFSYPSMRLAGERNFKP-VSIFSGLDALKRHWEVYSEAAIEAGHPDRSRHAVSHTVFCADTDKEAKRLVMEGPIGYCFERYLWRRFGMMDGYAKDAGIDPVDADLEFLVDNVFLVGSPDTVTEKINALFEATGGWGTLQVDYYDDPAPWFQSLELISKEVAPKIL
4PPA-I3fgcA0.1760.9853.130threading_4-----MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAEDVNLLDQMSKGRFRFGICRGLYDKDFRVFGTDMDNRALMDCWYDLMKEGFNEEHIKFPKIQLNPSAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYVTKIDHCLSYITSVDHDSNRAKDICRNFLGHWYDSYVDDSDQTKGYDFNKGQWRDFVLKRRIDYSYEINPVGTPEECIAIIQQDIDATGIDNICCGFEAGSEEEIIASMKLFQSDVMPYLK
5HHPRED-l1luc_A0.1770.9254.166threading_5-----MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAEDVNLLDQMSKGRFRFGICRGL--YDKDFRVFGTDMDNSRALMDCWYDLMKEGFNEGYIAADLNPSAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYDVKIDHCLSYITSVDHDSNRAKDICRNFLGHWYDSYVNATKIF-----------------RIDYSYEINPVGTPEECIAIIQQDIDATGIDNICCGFENGSEEEIIASMKLFQSDVMPYL-
6HHPRED-g2wgk_A0.1700.9673.561threading_6-A---METGLIFHPYMRPGRSARQTFDWGIKSAVQADSVGIDSMMISEHASQIWENIPNPELLIAAAALQTKNIKFAPMAHLLPHQHPAKLATMIGWLSQILEGRYFLGIGA--GAYPQASYMHGIRTKNLNDMVRESLFIMEKIWKREPEGKDAGYSPWGGKAPEIAVTGFNSPSMRLAGERNFKPVSIF-SGLDALKRHWEVYSEAAIEAGHPDRSRHAVSHTVFCADTDKEAKRLVMEGPRYLIPIW-RRFGMMD-GYAKDAGIDVDADLEFLVD--NVFLVGSPDTVTEKINALFEATGWGTLQVEAYYDDPAPWFQSLELISKVAPKILL
7SP32wgka0.1760.9854.490threading_7----AMETGLIFHPYMRPGRSARQTFDWGIKSAVQADSVGIDSMMISEHASQIWENIPNPELLIAAAALQTKNIKFAPMAHLLPHQHPAKLATMIGWLSQILEGRYFLGIGAGAYPQASYMHGIRNAGKNLNDMVRESLFIMEKIWKREPQHKLADFSPWGGKAPEIAVTGFSYPSMRLAGERNFKPV-SIFSGLDALKRHWEVYSEAAIEAGHPDRSRHAVSHTVFCADTDKEAKRLVMEGPIGYCFERYLIPRFGMMDGYAKDAGIDPVDADLEFLVDNVFLVGSPDTVTEKINALFEATGGWGTLQVDYYDDPAPWFQSLELISEVAPKILL
8SAM-T993fgcA0.1820.9523.674threading_8-----MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAEDVNLLDQMSKGRFRFGICRGFGTDMDNSRALMDCWYDLMKGFNE------GYIAAHIKFPKIQLNPSAYTQGPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVAEHGYDVTKIDHCLSYITSVDHDSNRAKDICRNFLGHWYDSYVNATKIFDDSDQTKGYDFNFVLKRRIDYSYEINPVGTPEECIAIIQQDIDATGIDNICCGFEANGSEEEIIASMKLFQSD-----
9MUSTER3fgcD0.1570.9312.268threading_9-----MKFGLFFLNFMNSKRSSDQVIEEMLDTAHYVDQLKFDTLAVYENHFSNNGVVGAPLTVAGFLLGMTKNAKVASLNHVITTHHPVRVAEEACLLDQMSEGRFAFGFSDCEK--SADMRFFNRPTDSQFQLFSECHKIINDAFTTSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLGLPLVFRWDDSNAQRKEYAGLYHEVAQAHGVVSQVRHKLTLLVNQNVDGEAARAEARVYLEEFVRESYSNT----------------DFEQKMGELLSENAIGTYEESTQAARVAIECCGAADLLMSFEMEDKAQQRAVIDVVNANIVKYHS
10SPARKS1luca0.1860.9284.195threading_10-----MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAEDVNLLDQMSKGRFRFGICR--GLYDKDFRVFGTDMDNSRALMDCWYDLMKEGFNEGYPKIQLNPSAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYVTKIDHCLSYITSVDHDSNRAKDICRNFLGHWYDSYVNATKIFR-----------------IDYSYEINPVGTPEECIAIIQQDIDATGIDNICCGFENGSEEEIIASMKLFQSVMPYLKE

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.786 to 1rhcA
SCOP code=c.1.16.3
TM-score=0.796 to 1rhcA
SCOP code=c.1.16.3
TM-score=0.768 to 1f07A
SCOP code=c.1.16.3
TM-score=0.764 to 1f07A
SCOP code=c.1.16.3
TM-score=0.788 to 1rhcA
SCOP code=c.1.16.3