Template-based Modeling Results for YHBO_ECOLI

Submitted Primary Sequence

>Length 172
MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
CCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCEEEECCCCHHHCCHHHCCEEEECCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCEEECCCEEEECCEEEECCCHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
5411000000330111100000110241302000012322321202312010101210330122200000001020021021133002002101533100000010000002031131120000210121033021201223000122100003003002100220031035
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
1	MUSTER	1oi4A	0.994	0.994	3.543	threading_1	LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG-
2	SPARKS	1oi4a	0.994	0.994	3.753	threading_2	LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG-
3	PROSPECT2	2vrnA	0.376	0.988	3.511	threading_3	TGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEKYRVDHVVSEVQVSDYDGLLLPGGTNPDKLRLEEGAMKFVRDMYDAGKPIAAIH-GPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKG-VVTSRKPDDLPAFNKKIVEEFAE
4	PPA-I	1oi4A	0.994	0.994	4.882	threading_4	LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG-
5	HHPRED-l	1oi4_A	0.994	0.994	3.394	threading_5	LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG-
6	HHPRED-g	1oi4_A	0.994	0.994	2.897	threading_6	LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG-
7	SP3	1oi4a	0.994	0.994	3.914	threading_7	LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG-
8	SAM-T99	1g2iA	0.475	0.942	4.412	threading_8	---KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGT--ITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKF-SEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDI-NAGVEWVDAEVVVDGN-WVSSRVPADLYAW-REFVKLLK-
9	MUSTER	1g2iA	0.488	0.942	3.322	threading_9	---KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG-TITGKH-GYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKF-SEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDI-NAGVEWVDAEVVVD-GNWVSSRVPADLYAW-REFVKLLK-
10	SPARKS	3uk7a	0.284	0.983	3.350	threading_10	-NSRTVLILCGDYEDYE-VVPFQALQAFGITVHTVCPGCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASIH-GQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPDVCVVDGSLITAATYEGHPEFIQLFVKALGG

Predicted Tertiary Structure


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TM-score=0.951 to 1g2iA TM-score=0.999 to native SCOP code=c.23.16.2	TM-score=0.951 to 1g2iA TM-score=0.999 to native SCOP code=c.23.16.2	TM-score=0.951 to 1g2iA TM-score=0.999 to native SCOP code=c.23.16.2	TM-score=0.933 to 1g2iA TM-score=0.946 to native SCOP code=c.23.16.2	TM-score=0.951 to 1g2iA TM-score=0.999 to native SCOP code=c.23.16.2

Experimental Structure

Download 1oi4A

SCOP code=c.23.16.2