Template-based Modeling Results for YHBJ_ECOLI

Submitted Primary Sequence

>Length 284
MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTLADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRLHPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTLADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRLHPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKP
CEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTLADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRLHPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKP
21100000221201000030022010000110002002200310243321000000022132023003201212332120100001033320021012122211012432103100221121021023302000001312122002002222323433200000000103210122010000010011131123024120213200201232230220021011002100210233331100000002213121110021002104432210201024234559
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTLADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRLHPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKP
1	SPARKS	1ek6a	0.165	0.894	1.051	threading_1	MEKVLVTG--GAGGSHTVLELLEAGYVVIDNFGGSLPESLRRVQELTGRSVEFEEDILDQGALQRLFKK--------YSFMAVIHFAGLKA-VGESVQ----KP----LDYYRVNLTGTIQLLEIMKAHVKNLVFSSSKSKFFIEEMIRDLC--QADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTVVDLAKGHIAALRKL-----KEQCGCRIYNLG-TGTGYSVLQMVQAMEKAS---GKKIPYKVVARREGDV
2	PROSPECT2	2qenA	0.145	0.827	1.205	threading_2	MPLTLLLGIRRVGKSSLLRAFNERPGILIDKLSLREVFRELNDLGEELGEFIVAFDEYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGR---------------------IAGEVLVKPFDKDTSVEFLKRGFREVNLD---------------------------VPENEIEEAVELLDGIPGWLVVFGVFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAENLKKMNW-IVEEDNTYKIARI
3	PPA-I	3h0kA	0.161	0.504	1.282	threading_3	-KVILITGMPGSGKSEFAKLLKERGAKVIVYGDGVVARLCVEELGTSNHDLVVFDGVRS------LAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLS-----KEISELIRRDREELKLIGEVIAMADYIITNDS-NYEEFKRRCEEVTDRVL--------------------------------------------------------------------------------------------------------------------------------
4	PROSPECT2	2fnaA	0.135	0.912	1.198	threading_4	APITLVLGLRRTGKSSIIKGINELNLPYIYISYKDFLLELQKEINKLKNIQGIVIGNEIKFNRLSFANLLESFEQASKDNVIIVLDVNLLPALAYAYDNLKRIKFISGSEGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID---------------FKDYEVVYE-KIGGIPGWLTYFLDNKNLDFAINQTLEYKKLILKEFENFLHGREIARKRYLN---------IRTLSKCGKWSDVKRALETQLTKHSWKYCPSEPLISLAFS
5	HHPRED-l	1zuh_A	0.180	0.451	1.606	threading_5	-QHLVLIGFMGSGKSSLAQELLALKLEVLDGLSVREFENFIDELKTLKTP--HVISTGGGIVMHE------NLK--G-LGTTFYLKMDFETLIKRLNQ-------LNNL-TQAKELFEKRQAL--YEKNASFIIDARG-GLNNSLKQVLQF-------------------------------------------------------------------------------------------------------------------------------------
6	PROSPECT2	1lhpa	0.109	0.901	1.145	threading_6	CRVLSIQSRGYVGNRAATFPLQVLGFEVGQVLNSDELQELYDGLKLNHVDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGD-----------QRNGEGAMYVPDDLLPVYREKVVPVQFEAELLTGRKIHSQEEALEVMDMLHSMGPD-----TVVITSSNLLSPRGSDYLMALGSVVTQRIRMEMHKVDAVFMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAK-----SGEGVKPSPAQLMVQSKKDIESPE-------IVVQATVL
7	HHPRED-g	1zuh_A	0.169	0.458	1.589	threading_7	-QHLVLIGFMGSGKSSLAQELLALKLEVLDGLSVREFEEFRMFEDEKTLKTPHVISTGGGIVMHEN------L---KGLGTTFYLKMDFETLIKRLNQ-------LNNLTQA-KELFEKRQAL--YEKNASFIIDARG-GLNNSLKQVLQF-------------------------------------------------------------------------------------------------------------------------------------
8	PROSPECT2	1lt7a	0.070	0.901	1.143	threading_8	KGILIVIGDGGFVRQLHREFLRAGSNVMQTFTVNEAAADIARQVADEGDALVAGGAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKTVKLMKE--------------GLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNL--------------GVRYIGGCCGFEPYHIRAIAEELAPERGFLPPRARARKEYMSKPD
9	PPA-I	3vaaA	0.178	0.514	1.185	threading_9	MVRIFLTGYMGAGKTTLGKAFARKNVPFIDHKTRELERNMLHEVAEFENVVIST-----GGGAPCFYDNMEFMNRTG---KTVFLNVHPDVLFRRLRIAKQQRPILQGKEDLMDFIIQALEKRAPFYTQAQYIFNADELEIESSVQRLQELLEL----------------------------------------------------------------------------------------------------------------------------------
10	HHPRED-l	2iyv_A	0.178	0.535	1.471	threading_10	-AKAVLVGLPGSGKSTIGRRLKALGVGLLDGRSIADIFAEFRAALAD-HDG--VLSLGGGAVTS---PGVRAALAGH---TVVYLEISAAEGVRRTGG-NTVRPLLAGP-DRAEKYRAKRAPL--YRRVATMRVDTNRRNPGAVVRHILSRLQVPSPSE------AATLEHH----------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.763 to 1a9yA SCOP code=c.2.1.2	TM-score=0.512 to 2fnaA SCOP code=a.4.5.11	TM-score=0.579 to 1vhtA SCOP code=c.37.1.1	TM-score=0.627 to 2fnaA SCOP code=a.4.5.11	TM-score=0.558 to 2iyvA SCOP code=c.37.1.2