Template-based Modeling Results for YHAM_ECOLI

Submitted Primary Sequence

>Length 436
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCDEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHDGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCDEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHDGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCHHCCCCHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEEECCCEEEEEEECCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCDEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHDGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
5533223201220020013202211101100000000000032143201201010132003201000001112110100000000012231102103302230021022103222020202321431000101011343200000121110000011241000223222232333221221230201100200340222002101200210110033102132103000101221332201310000000100000112101020000000111220000000001002212131320010000010000002221130000000000000000000100303130001000000010001002101100011001000000100000123210212201013103200210020013102300210010112324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCDEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHDGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
1	PROSPECT2	1ejlI	0.084	0.842	1.505	threading_1	GTVNWS---VEDIVKGINSN-------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAALTNIASGTSEQISLLASPHAHISEQAVWALGN-------------------------------------------------------IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLCGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY----TSGGTVEQIVYLVHIIQVILDAISNIFQAAEKLGETEKLSIMIEECLDKIEALQRHENESVYKASLNLIEKYFS
2	HHPRED-l	2hp0_A	0.134	0.530	1.598	threading_2	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTTKLAEKVVKISQPALKAAQDGVIDTVAAALGGVTEHS----VQVALKYVGSGLWGSN-FDAAFVNG-AAHAIDFDDSFPV-R-----G-HPSSSLVPIFAVGEHVGANGHNCLKSYVLGIEVVATLGRAVGKGHYLAGSTLGVFGATTAAALLLGADEEQLRNAWGIAASNSCGIIKNFGT-TKP-HTGSAARNGVLSAWLS-QSFT--GCQTVFDDELFNA-QKFGTPWAPGLKKPLAGLFAI-KEHG-
3	PROSPECT2	1jdha	0.082	0.924	1.439	threading_3	KKEASRHAIMSAIVRTMQNTNDVMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIITYTYEKLLWTTSRVLKV------LSVCSSNKPAI-----VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL------LGTLVQLLGSDDINVVTCAAGILSNLYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRRLVQLLVRAHQDTQFVEG--VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN--IQRVAAGVLCELAQDKEAAEA--------IEAEGATAPLTELLHSRNEGVATYAAAVLFRM----S
4	HHPRED-g	2hp0_A	0.128	0.539	1.199	threading_4	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTTKLAEKVVSAWKAKLKAAQDGVIDTVAAALGGVTEHSVQVALKYVAATGGSGLWGVN-FDAAFVNG-AAHAIDFDDSFP-----V-RGHPS-SSLVPIFAVGEHVGANGHNCLKSYVLGIEVVATLGRAVGK-GHYLGSTLGVFGATTAAALLLGADEEQLRNAWGIAASNSCGIIKNFGT-TKP-HTGSAARNGVLSAWLS-QSF--TGCQTVFDDELFNA-QKFGTPWAPGLNHPLAGLFAI-KEHGT
5	PROSPECT2	1ee4a	0.127	0.849	1.415	threading_5	LNSDDMQEQLSATVKFRQPRLVEFMRENQPEMLQLEAAWATNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYLGLFNSNKPSLIRTATWTLSN-------------------------------------------------------LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGQTQVVINAGVLPALRLLLSSPKENI--KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTK---KEACWAISNASSGGLQRPDIIRYLVSQCIKPLCDLLEIADNRIITLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE----TYF
6	HHPRED-l	1szq_A	0.113	0.548	1.278	threading_6	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EFDREIVDIVDYV-ISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVPNVPGLDPVQAAFNIGA-IRWLDFNDTWL-----AAEWGHPSDNLGGILATADWAPLT-KQVLTA-IKAHEIQGCIALENSFNRVGLDVLLVKVASTAVVAE-LGLTREEILNAVSLAWVDGQSLRTYHTGTRKSWAAGDATSRAVRLAL-AKTGE---GYPSALTAPGFYDVSAA-T-QAAGKTAADIACIRIIDKKG-
7	HHPRED-l	2iaf_A	0.157	0.278	1.267	threading_7	------------------------SSTVGP-LAAFLQLLEQKNLFDKTQRVKVELYGSLALTGKG--------HGTDKAILNGLENKAPE--------------IPRHEILDSNLLNLPFHEAT-DFLFLQKELLPKHNG-RFSAFDGNAEQVYYSIGGGFITTEEDFDK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	HHPRED-g	1szq_A	0.097	0.546	1.088	threading_8	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EFDREIVDIVDYV-NSSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVRVPGTQPVQAAFNIGA-IRWLDFNDT-----WLAAEWGHPSDNLGGILATADWLPLT-KQVLTA-IKAHEIQGCIALENSFNRVGLDHLLVKVASTAVVAE-LGLTREEILNAVSLAWVDGQSLRTNTG-TRKSWAAGDATSRAVRLAL-AKTGE---GYPSALTAPVW-GFYDVSFKG-ESFRFQSYV-ENVLFKISF
9	HHPRED-g	2iaf_A	0.165	0.278	1.087	threading_9	------------------------SSTVGP-LAANLQLLEQKNLFDKTQRVKVELYGSLALTGKG--------HGTDKAILNGLENKAPE-------------IPR-HEILDSNLLNIPFHEA-TDFLFLQKELPKHSNG-RFSAFDGNIEQVYYSIGGGFITTEE-DFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	PROSPECT2	1xm9A	0.103	0.798	1.399	threading_10	LSSQDEKYQAIGAYYIQHCKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL-LRRTGNAEIQLTGLLWNLSST--------DELKEELIADALPVLADRVIIPFSGWCVVD------------------------------------------------------------PEVFFNA-------TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL-TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH----------PLLHRVMGNQVFPEVTRLLTS-HTGNTSNSEDILSSACYTVRNLMASQPQLAKQNIINLCRSSAS

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.672 to 1wa5B SCOP code=a.118.1.1	TM-score=0.554 to 1szqA SCOP code=e.44.1.1	TM-score=0.715 to 1wa5B SCOP code=a.118.1.1	TM-score=0.555 to 1szqA SCOP code=e.44.1.1	TM-score=0.739 to 1ialA SCOP code=a.118.1.1