Template-based Modeling Results for YGJV_ECOLI

Submitted Primary Sequence

>Length 183
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG
340110010000000000000001211310100000000000000000100000000001001000012121110000000000000002021002000000100000000013112010000000000000000000000000100000000010020121223113213233222223485
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG
1	SPARKS	2gena	0.065	0.836	1.001	threading_1	IE---IRDRSG-----ASIGSLYHKERIHGELYLAGIGQYAALLEAGFARARSAEETVRLLVTSYIDWVVANPDWARFILSRGRVEAGELGERLRADNQAHFARIHAAAGYRAEGLDCFASVVIGPAHDLARQWLAGRTRVALADC--RELLAQVAWDSVRAA--------------------
2	PROSPECT2	1pw4A2	0.101	0.918	1.127	threading_2	PNKLLWYIAIANVFVYLLRYGIKHFALDKSSWAYFLYEYAGIPGTLLCNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF--------LIYGPVMLIGLHALELAPKKAAGTAAFTGLFGYLGGSVAASAIVGYTVDIGGSILAVILLIVVMIGEKRRHEQLLQELVP-------
3	HHPRED-g	2i68_A	0.160	0.410	1.172	threading_3	---YI-----------------------------------------------YLGGAILAEVIGTTLM--------------------------------VGTIICYCASFWLLAQTLA----IAYAIWSGVGIVLISLLSWG-AIIGMMLICAGVLIINLL---------------------
4	PROSPECT2	1r2fA	0.082	1.000	1.117	threading_4	ISQQLTIRVFTGLTLLDTIQNMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESSGFWLPMYFSSRGKLTNTAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMEIRYTEALYAETGWVNDYEALFPPEMAD
5	PROSPECT2	1t33A	0.079	0.896	1.097	threading_5	MNEQAKSQLIAAALAQFGYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISRAYQLVHEQVIDPLHTHLTRLVA--AYTGCDANDTRMILHTHALLGEVLAFRLGKETILLRKAELIYQTVTCHIDLILHGLTQ-----------------
6	PROSPECT2	2of3A	0.088	0.989	1.083	threading_6	AEISQLQTLLGHLAALDSLVRLADTSPRSLLSNSDL--LLKWCTLRFFETNPAALIKVLELCKVIVELIRMSQEEVSAFVPYLLLKVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNALKSLSVEKTVAPFVVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLGV
7	PROSPECT2	3a0oA3	0.087	1.000	1.083	threading_7	GQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDEAGFRVVVALAWGYDWLYERRTVRSVLLERTREVADHVPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGMTGMAYLIEAANLIRSYIGDLPGLKLGYNVRQFAHYQWYFDHIKADATGTEMAFPQVEAVSPADLP
8	MUSTER	1pw4A2	0.143	0.956	0.845	threading_8	IAIANVFVYLLRYGILDWSPTYLKEALDKSSWAYFLYEYAGIPGTLLCGGATGVFFMTLVTIATIVYWMNGNPTVDMICMIVIGFLIYGPVMLIGLHALELAKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP-------
9	SPARKS	3crja	0.052	0.842	0.910	threading_9	LTIQRIADEYGK---STAAVHYYYDTKDDLLAAFLDYLLERFVDSIHDVETTDPEARLNLLLDELLVKPQENPDLSVALLERSQAPYKEAFSDRFRQNDEYVRLKAVINHGIDEGVEHVTRSLLTIIDGARTRAVLDD-TEELETARQTASEYADALQ-------------------------
10	PROSPECT2	3kb9A	0.066	1.000	1.056	threading_10	MPADKVEEYADGLCYTDLMAGYYLGPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSPGDHTLVAGFADSVRRLWNARFARHFHTVIEAYDREFHNRTRGIELRRLTFAHWIWTDLLEPSSGCAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHSWDDRSTPPYVNN

Predicted Tertiary Structure


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TM-score=0.744 to 2genA SCOP code=a.4.1.9	TM-score=0.782 to 1pw4A SCOP code=f.38.1.1	TM-score=0.376 to 1mw7A SCOP code=e.39.1.1	TM-score=0.577 to 2oc5A SCOP code=a.25.1.6	TM-score=0.791 to 1t33A SCOP code=a.4.1.9