Template-based Modeling Results for YGJJ_ECOLI

Submitted Primary Sequence

>Length 356
MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTSSPSFRFYGELGVGGYMDLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADHDGNAWVPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQIFLMQYFYW
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTSSPSFRFYGELGVGGYMDLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADHDGNAWVPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQIFLMQYFYW
CCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHCCCCCCCCCCCEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCEEEEEHHHHCEEEEEEEEECCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHCCEEEEHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEHHHCCCCCCCCCHHHHHEHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTSSPSFRFYGELGVGGYMDLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADHDGNAWVPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQIFLMQYFYW
44211120110000000000000023133233332422222221221010001000100000212232312201002000201200110001131000100131201022201100210112000001133111000002211101102101110111001022132011002021221101000100221323313011111312211110001110200010101210100000101223010000112132000000012232322322221000000000210320000000011223333243210000000000200212000000021114322422111000021123
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTSSPSFRFYGELGVGGYMDLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADHDGNAWVPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQIFLMQYFYW
1	MUSTER	1phoA	0.159	0.846	1.228	threading_1	---------------------------AEIYNKD----------GNKLDVYGKVKAMHYMS---DNASKDGDQSYIRFGFKGETDQLTGYGRWE-AEFAGNKAESDTAQQK--------TRLAFAGLKYKDLGSFDYGR-NLGALYDVEAWTDMFPEFGGDSSAQTDNSGLATYRNVIDGLNLTLQYQ--GKNENRDVKKQNGDGFGTSLTYDFGAISGAYTNSDRTNEQNLQSRG--TGKRAEAWATGLKYDYLATFYSETRKMTPITGGFANKTNFEAVAQYQFDFGLRPSLGYVLSKKDIEGIGDEDLVYIDVGATYYF-NKNMSAFVDYKINQDNKLNINNDDIVAVGTYQF
2	SPARKS	1hxxa	0.136	0.865	1.590	threading_2	-------------------------------------AEIYNKDGNKVDLYGKAVGLHYFGNGENSYGGNGDMTYARLGFKGETQ------INSDGQWEYNFQGNNSEGADAQTGNKT--RLAFAGLKYADVGSFDYGR-NYGVVFDALGYTDMLPEFGGDTAYSDDFGGVATYRGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQE--AQPLGNGKKAEQWATGLKYIYLAANYGETRNATPITNKFTNTQDVLLVAQYQFDFGLRPSIAYTKSKAKEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKGSDDTVAVGIVYQF
3	PROSPECT2	3c7eA	0.079	1.000	1.472	threading_3	ATSTTIAKHIGNSNPLIDHHLGAMSSDDYEYNSNGTIKDNSFANLNRVFVIAIPVAGANGANGGRGIAKWAGASWAPSIAVKKINGFLYFANSGGGVLTADSPIGPWTDPIGKPLVTPSTPGMSGVFVDDDGTGYLYGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGSASTIDAPFMFEDYCINFGGTHPADKPFTYRGHFLKNPGAFFGGGGNNHHAVFNFKNEWYVVYHAALFGAGKGYRSPHINKLVHNADGSIQEVAANYAGVTQISNLNPYNRVEAETFAWNGRILTEKSTAPGGPVNNQHVTSIKIEVRLDSADGKLVGTLNVPSTGGAQTGTGTGNLFNFDYWQF
4	PPA-I	1phoA	0.127	0.860	1.823	threading_4	-------------------------------------AEIYNKDGNKLDVYGKVKAMHYMS---DNASKDGDQSYIRFGFKGETDQLTGYGR---WEAEFAGNKAESDTAQQK------TRLAFAGLKYKDLGSFDYGR-NLGALYDVEAWTDMFPEFGGDSSAQTDNYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLNNIYLATFYSETRKMTPITGGFANKTNFEAVAQYQFDFGLRPSLGYVLGKDIEGIGDEDLVNYIDVGATYYFNKNMVDYKINQLDSDNKLNINNDDIVAVGMTYQF
5	HHPRED-l	1pho_A	0.171	0.854	5.494	threading_5	---------------------------AEIYNKD----------GNKLDVYGKVKAMHYM---SDNASKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESD------TAQQKTRLAFAGLKYKDLGSFDYG-RNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRA---SGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGSDFAISGAYTNSDRRAEAWATGLKYIYLATFYSETRKMTPITGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDGIGDEDLVNYIDVGATY-YFNKNMSAFVDYKINQLDSDNINNDDIVAVGMTY-
6	HHPRED-g	2j1n_A	0.157	0.860	4.654	threading_6	---------------------------AEVYNKD----------GNKLDLYGKVDGLHYFS---DNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAE-------NENNSWTRVAFAGLKFQDVGSFDYG-RNYGVVYDVTSWTDVLPEFGGDTYMQQRGNGFATYRNTVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDY-EGFGIGGAISSSKRTAETYTGGLKYIYLAAQYTQTYNATRVGGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDILKYVDVGATYYFNK-NMSTYVDYKINLLDDNINTDNIVALGLVYQF
7	SP3	1hxxa	0.161	0.854	1.560	threading_7	-------------------------------------AEIYNKDGNKVDLYGKAVGLHYFGNGENSYGGNGDMTYARLGFKGETSDLTGYGQ---WEYNFQ--GNNSEGADAQTGNKT--RLAFAGLKYADVGSFDYGR-NYGVVFDALGYTDMLPEFGGDTAYSDDVGGVATYRNSNDGLNFAVQYL----GKNERDTARRSNGDGVGGSISYE--YEGVGAYGAADRTNLQEAQPLNGKKAEQWATGLKYIYLAANYGETRNATPITNKFTNTQDVLLVAQYQFDFGLRPSIAYTKSKDVEGIGDVDLVNYFEVGATYYFNK-NMSTYVDYIINQDNKLGVGSDDTVAVGIVYQ
8	SAM-T99	2c6fA2	0.196	0.890	0.629	threading_8	KVCLPNKTATCWSLDPDLTNILASSR-----------------SYAMLLFAWE---GWHNAAGIPLKPLYEDFTALSNEAYKQDGF--------------TDTGAYWRSWYNSPTFEDDLEHLYALHRRYGDRYINLRGPIPAHLLGDMWAQSWENIYDMVVPFPDKPNLATHMFRVAEEFFTSLELSPEKPADGREVVCHASAWDFYNDQLSTVHHEMGHIQYDLPVSLRRGANPGFHEAIGDVLALSVSTPEH----LHKIGLLDRVT-NDTESDINYLLKMALEKIAFLPFGYLVDQWRWGVFSGRTPSRYNFDWWYLRTKYRNETHFDAKFHVPNVTPYIRYFVSFVLQFQF
9	MUSTER	1hxuA	0.163	0.860	1.196	threading_9	---------------------------AEIYNKD----------GNKVDLYGKAKGLHYFSNGENSYGGNGDMTYARLGFKGETSDLTGYGQWE-YNFQGNNSEGADAQTGNKT------RLAFAGLKYADVGSFDYGR-NYGVVYDALGYTDMLPEFGGDTAYSDDFGGVATYRNSVDGLNFAVQYL--GKNERDTARRSNGDGVGGSISYEYEGGIVAYGAADRTNL-QEAQPL-GNGKKAEQWATGLKYDAYLAANYGETRNATPITNKFTNTDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLYFEVGATYYFNK-NMSTYVDYIINQDNKLGVGSDDTVAVGVYQF
10	SPARKS	1e54a	0.132	0.831	1.157	threading_10	---------------------------------------------SSVTLFGIV-DTNVAYVNKDAAGD----SRYGLGTSGASTSRLGLRGGGGLKAGFWLEGEIFGDDGNASGFNFK-RRSTVSLSGNF-GEVRLG-RDLVPTSQKLTSYDLFSATGIGPFMGFRNWNLISYYPNFGGFNAGFGYAFDEKQTIGTA-DSVGRYIGGYVAYDNGPLSASLGLAQQK---TAVGGLATDRDEITLGASYNFGVAKLSGLLQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYD---QKAIDSKAHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQ

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.768 to 1phoA SCOP code=f.4.3.1	TM-score=0.812 to 1phoA SCOP code=f.4.3.1	TM-score=0.831 to 1hxuA SCOP code=f.4.3.1	TM-score=0.572 to 1yifA SCOP code=b.29.1.23	TM-score=0.731 to 1phoA SCOP code=f.4.3.1