Template-based Modeling Results for PAT_ECOLI

Submitted Primary Sequence

>Length 459
MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEEA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEEA
CCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHEEECCCHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHCCCCCCEEEECHHHHCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEEA
543232222212001210322344213232032013201210331012001201210121132010001102301001231210000000000000011012002001310241000022110211110020003102231200000110020020002001113234230000001001101000000011223133212100210200100003001200230342231000000100213101110221002101300341100000010101102102100011230200000002001001000000001230021012212211010110000000000002102333102102310210130023005312310110102000000101333201200110143300000023122000000101022310220030023002203222345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEEA
1	MUSTER	2bylA	0.320	0.865	3.096	threading_1	------------------------------GPPTSDDIFEREYKYG-----------AHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI--KPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETWDAWKVCLRLRDNGLLAKPT--HGDIIRFAPPLVIKEDELRESIEIINKTILSF-------
2	SPARKS	3nx3a	0.315	0.830	4.263	threading_2	-----------------------------------------------------QSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASAL--ERVFFTNSGTESIEGA-KTARKYAFNKGGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLV------NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCG-GRSGKFFAYEHAQILPDI-TSAKALGCG-LSVGAFVINQKVASNS-LEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFD-FCKKRKGLGF-QGLSLDKSVKVAKVIQKCQENALLLISCGEN--DLRFLPPLILQKEHIDES-EKLRKALKSF-------
3	PROSPECT2	2pb0A	0.328	0.837	4.604	threading_3	T----------------------------------------FDEVILP-----------VYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAE--RVLFMNSGTEANETAFKLARHYAHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVM------DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIA-------SAFGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFD-IFSDIRGMGLLIGAELKPKGRARDFLYAGAEAGVMVLNAGAD--VMRFAPSLVVEEADIHEGMQRFAQAVGKVV-----A
4	PPA-I	2bylA	0.320	0.865	4.278	threading_4	------------------------------GPPTSDDIFEREYKYGA-----------HNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNY--HKVLPMNTGVEAGETACKLARKWGYQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI--KPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL---PSDVVTAVRGKGLLNAIVIKETKDAWKVCLRLRDNGLLAKPT--HGDIIRFAPPLVIKEDELRESIEIINKTILSF-------
5	HHPRED-l	1s0a_A	0.273	0.895	2.710	threading_5	---------------------------------MTTDDLAFDQRHILHPFTSMTS-------PLPVYVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLENLFAGEWDERDMVGFARLMAAHRHEIAAVIIEPIQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG-ALTGGTMTLSATLTTREVAETISNGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPAR-DA-EMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPF---GKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ--
6	HHPRED-g	1vef_A	0.408	0.843	2.403	threading_6	----------------------------WR------ALLEAEK-----------TLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT---GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD------EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSM--PKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS--P-KIREVRGMGLMVGLELKEK-AAPYIARLEKEHRVLALQAGPT--VIRFLPPLVIEKEDLERVVEAVRAVLA---------
7	SP3	3nx3a	0.315	0.830	4.390	threading_7	-----------------------------------------------------QSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASAL--ERVFFTNSGTESIEGA-KTARKYAFNKGGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLV------NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCG-GRSGKFFAYEHAQILPDI-TSAKALGCG-LSVGAFVINQKVASNS-LEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFD-FCKKRKGLGF-QGLSLDKSVKVAKVIQKCQENALLLISCGEN--DLRFLPPLILQKEHIDES-EKLRKALKSF-------
8	SAM-T99	3ruyA	0.324	0.841	3.123	threading_8	----------------------------------------------KDIIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVETAIKTARRWAYDVKRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI------TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILG-ALGGGVFPISCAAANRDILGVF--EPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEI--DNP-MITEVRGKGLFIGIELNEP--ARPYCEQLKAAGLLCKETH--ENVIRIAPPLVISEEDLEWAFQKIKAVLS---------
9	MUSTER	1wkgA	0.408	0.843	3.055	threading_9	----------------------------------WRALLEAEKTLD-----------SGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT---GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAV------DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSM--PKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPK---IREVRGMGLMVGLELKEK-AAPYIARLEKEHRVLALQAGPT--VIRFLPPLVIEKEDLERVVEAVRAVLA---------
10	SPARKS	2e54a	0.376	0.834	4.196	threading_10	------------------------------------------------------MYLMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFG--GKVFFANTGTEANEAAIKIARKYGKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKM------SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIVNERAN---VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD-VVADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGNN--TIRFLPPLTVEYGEIDLAVETLKKVLQGI-------

Predicted Tertiary Structure


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TM-score=0.915 to 2bylA SCOP code=c.67.1.4	TM-score=0.916 to 2bylA SCOP code=c.67.1.4	TM-score=0.845 to 1wkgA SCOP code=c.67.1.4	TM-score=0.858 to 1wkgA SCOP code=c.67.1.4	TM-score=0.917 to 2bylA SCOP code=c.67.1.4