Template-based Modeling Results for YGID_ECOLI

Submitted Primary Sequence

>Length 262
MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGIEMGSLSMLSVQIG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGIEMGSLSMLSVQIG
CCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGIEMGSLSMLSVQIG
5533310000001001110023220020024003203302000001010212110000132131011111013200102130310210032003002413020333211011000000000023220100000021231121002002101203421000000010110021021312221221011012002200222222112100202303101101102210000000000122433120002102000000100112
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGIEMGSLSMLSVQIG
1	MUSTER	2pw6A	0.953	0.893	2.744	threading_1	-----RPALFLGHGPNV--LEDNLYTRSWQKLGT-LPRPQAIVVVSAHWFTRGTGVTAET--------------LYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVL-IKYPDADIP-VQLSIDSSKPAAWHFE-GRKLAALRDEGI-LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGI-EGSLSL-SVQIG
2	SPARKS	2pw6a	0.949	0.893	5.229	threading_2	-----RPALFLGHGPNV--LEDNLYTRSWQKLG-TLPRPQAIVVVSAHWFTRGTGVT--------------AETLYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLI-KYPDADI-PVQLSIDSSKPAAWHF-EGRKLAALRDEGI-LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGI-EGSLSL-SVQIG
3	PROSPECT2	2pw6A	0.872	0.893	3.295	threading_3	-----RPALFLGHGPNV--LEDNLYTRSWQKLGT-LPRPQAIVVVSAHWFTRGTGVTAETLYDT--------------HYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLI-KYPDADIPVQ-LSIDSSKPAA-WHFEGRKLAALRDEGI-LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEP-ITIPVEGIEGSLSLSVQ-IG
4	PPA-I	2pw6A	0.940	0.893	3.700	threading_4	-----RPALFLGHGPNV--LEDNLYTRSWQKLGT-LPRPQAIVVVSAHWFTRGTGVTAETLYDT--------------HYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVL-IKYPDADIP-VQLSIDSSKPAAWHFE-GRKLAALRDEGI-LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGI-EGSLSL-SVQIG
5	HHPRED-l	2pw6_A	0.987	0.870	10.689	threading_5	------PALFLGHG---NVLEDNLYTRSWQKLG-TLPRPQAIVVVSAHWFTRGTGVTA----------------LYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIK-YPDADIP-VQLSIDSSKPAAWHFE-GRKLAALRDEGI-LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTQGP-VEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGIE-GSLS-LSVQI-
6	HHPRED-g	2pw6_A	0.987	0.874	10.105	threading_6	------PALFLGHG---NVLEDNLYTRSWQKLG-TLPRPQAIVVVSAHWFTRGTGVTA----------------LYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIK-YPDADIP-VQLSIDSSKPAAWHFE-GRKLAALRDEGI-LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTQGP-VEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGIE-GSLS-LSVQIG
7	SP3	2pw6a	0.940	0.893	5.728	threading_7	-----RPALFLGHGPNV--LEDNLYTRSWQKLGT-LPRPQAIVVVSAHWFTRGTGVT--------------AETLYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLI-KYPDADI-PVQLSIDSSKPAAWHF-EGRKLAALRDEGI-LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGI-EGSLSLS-VQIG
8	SAM-T99	2pw6A	0.918	0.889	7.281	threading_8	-----RPALFLGHG---NVLEDNLYTRSWQKLG-TLPRPQAIVVVSAHWFTRGTGVTA--------------ETLYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIK-YPDADIP-VQLSIDSSKPAAWHFE-GRKLAALRDEGIL-VASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGA-WDGQEPITIPVEGIEGSLS-LSVQIG
9	MUSTER	1bouB	0.144	0.927	1.524	threading_9	--ARVTTGITSSH-IPAAAIQTGPVFKGYQPIRDWINMPDVVILVYNHASAPTFAIGCAETFK-PADEGWGPRPV----PDVKGHPDLAWHIAQSLILDEFDMTMNQMDVDHGCTVPLSMIFGEPECKVIPFPVNVVTSGKRCFALGDSIRAAVESNVHVWGTGGMSHQL------QGPRAGLINKEFDLNFIDKLISD----PEELSKMPHIQYLRESGSEGVELVMWLIMRGALPEKVRDLYTFYNTALGAMILQP-TAG
10	SPARKS	1boub	0.131	0.931	2.321	threading_10	--ARVTTGITSSH-IPALAIQTGPVFKGYQPIRDWINMPDVVILVYNHASAFDMAIGCAETFKPADEGWGPRP-----VPDVKGHPDLAWHIAQSLILDEFDMTMNQMDVDHGCTVPLSMIFGEPECKVIPFPVNVVTSGKRCFALGDSIRAAVESNVHVWGTGGMSHQLQGPRAGLIN------KEFDLNFIDKLIS----DPEELSKMPHIQYLRESGSEGVELVMWLIMRGALPEKVRDLYTFYHIPASNTALGAMILQ

Predicted Tertiary Structure


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TM-score=0.940 to 2pw6A TM-score=0.994 to native SCOP code=c.56.6.1	TM-score=0.933 to 2pw6A TM-score=0.988 to native SCOP code=c.56.6.1	TM-score=0.935 to 2pw6A TM-score=0.989 to native SCOP code=c.56.6.1	TM-score=0.930 to 2pw6A TM-score=0.984 to native SCOP code=c.56.6.1	TM-score=0.931 to 2pw6A TM-score=0.984 to native SCOP code=c.56.6.1

Experimental Structure

Download 2pw6A

SCOP code=c.56.6.1