Template-based Modeling Results for YGHS_ECOLI

Submitted Primary Sequence

>Length 237
MNQRNMSIINSTPVRVIAIVGCDGSGKSTLTASLVNELAARMPTEHIYLGQSSGRIGEWISQLPVIGAPFGRYLRSKAAHVHEKPSTPPGNITALVIYLLSCWRAYKFRKMLCKSQQGFLLITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELKLYQWMASYLPVLLIRLGIDEQTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGRHPADEILQASLRAIHAALS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNQRNMSIINSTPVRVIAIVGCDGSGKSTLTASLVNELAARMPTEHIYLGQSSGRIGEWISQLPVIGAPFGRYLRSKAAHVHEKPSTPPGNITALVIYLLSCWRAYKFRKMLCKSQQGFLLITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELKLYQWMASYLPVLLIRLGIDEQTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGRHPADEILQASLRAIHAALS
CCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNQRNMSIINSTPVRVIAIVGCDGSGKSTLTASLVNELAARMPTEHIYLGQSSGRIGEWISQLPVIGAPFGRYLRSKAAHVHEKPSTPPGNITALVIYLLSCWRAYKFRKMLCKSQQGFLLITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELKLYQWMASYLPVLLIRLGIDEQTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGRHPADEILQASLRAIHAALS
554331101232301000010021111110011003101431322211123221422321221122122012102121232333322220111000000000110110220121034010000021121311012120231242211200020022111201221212200000001022210032323331220121011021112322200101032103200310120023115
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNQRNMSIINSTPVRVIAIVGCDGSGKSTLTASLVNELAARMPTEHIYLGQSSGRIGEWISQLPVIGAPFGRYLRSKAAHVHEKPSTPPGNITALVIYLLSCWRAYKFRKMLCKSQQGFLLITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELKLYQWMASYLPVLLIRLGIDEQTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGRHPADEILQASLRAIHAALS
1	MUSTER	3lv8A	0.168	0.831	2.136	threading_1	------------NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE-------------PGGTLLAEKLRALVKEEH---PGEELQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQ---AYQGGGRQIA---PSTMQSLKQTALG------DFKPDLTLYLDIDPKLGLERELKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLS
2	SPARKS	2wwfa	0.163	0.827	3.789	threading_2	MTD------DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRE-------------TGIGQIISKYLKMENSMS-------NETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGV---AYSSGALNLN------KTWCMNPDQ------GLIKPDVVFYLNVPPNYAQNRSDIYEKVETQKKIYETYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKIKV
3	PROSPECT2	3lv8A	0.168	0.827	2.373	threading_3	------------NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITR-------------TREPGGTLLAEKLRALVKE----EHPGEELQDITELLLVYAARVQLVENIKPALARGEWVVGDRHDMSSQ---AYQGGGRQ---IAPSTMQSLKQTA------LGDFKPDLTLYLDIDPKLGLERELDMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLN
4	PPA-I	3lv8A	0.162	0.831	2.490	threading_4	------------NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG-------------GTLLAEKLRALVKEEHP---GEELQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQ---AYQGGGRQIAPSTMQSLKQTALG---------DFKPDLTLYLDIDPKLGLERELDMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLS
5	HHPRED-l	2v54_A	0.160	0.789	2.039	threading_5	----------MSRGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQSTVTGKMIDD--------------YLTRKK------TYNDHIV-NLLFCANRWEFASFIQEQLEQGITLIVDRYAFSGVAYAAAK----GASMTLSK---SYE---------SGLPKPDLVIFLESGSKEINRNVGEEIYVTFQQKVLQEYKKMIEEIHWQIISSEFEEDVKKELIKNIVIEAI-
6	HHPRED-g	4tmk_A	0.142	0.831	2.737	threading_6	------------RSKYIVIEGLEGAGKTTARNVVVETLEQLGIDMVFTREPG--------------GTQLAEKLRSLLLDIKSV-GDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLST---QAYQGGGRGIDQHMLATLRDAVL---------GDFRPDLTLYLDVTPEVGLKRRIEQESFDFFNRTRARYLAAQDK-SIHTIDATQPLEAVMDAIRTTVTHWVK
7	SP3	2wwfa	0.163	0.827	3.810	threading_7	MTDDKK------KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRE-------------TGIGQIISKYLKMENSMS-------NETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYS---GVAYSSGALNLN------KTWCMNPDQ------GLIKPDVVFYLNVPPNYAQNRSDIYEKVETQKKIYETYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKIKV
8	SAM-T99	3hjnA	0.210	0.785	3.005	threading_8	--------------MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEE----------------------EVTPKAELFLFLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQ-------------GFGRNLGKEIVEELNDFADGLIPDLTFYIDVDVETALKRKRFEKREFLERVREGYLVLAREHPRIVVLDGKRSIEEIHRDVVREVKRR--
9	MUSTER	4tmkA	0.161	0.840	2.103	threading_9	------------RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE-------------PGGTQLAEKLRSLLLDIKSVGDE-VITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQ---AYQGGGRGID------QHMLATLRDAVLG---DFRPDLTLYLDVTPEVGLKRARQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVK
10	SPARKS	4tmka	0.151	0.840	3.146	threading_10	------------RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG-------------GTQLAEKLRSLLLDIKSVGDE-VITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQ---AYQGGGRGIDQHMLATLRDAVL---------GDFRPDLTLYLDVTPEVGLKRAEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVK

Predicted Tertiary Structure


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TM-score=0.851 to 4tmkA SCOP code=c.37.1.1	TM-score=0.859 to 4tmkA SCOP code=c.37.1.1	TM-score=0.808 to 1e2fA SCOP code=c.37.1.1	TM-score=0.842 to 4tmkA SCOP code=c.37.1.1	TM-score=0.849 to 4tmkA SCOP code=c.37.1.1