Template-based Modeling Results for YGHR_ECOLI


  Submitted Primary Sequence

>Length 252
MDALQTQTVNSTTAPQPNYIPGLIAVVGCDGTGKSTLTTDLVKSLQQHWQTERRYLGLLSGEDGDKIKRLPLVGVWLERRLAAKSSKTQSMKTKSPALWAAVIMYCFSLRRMANLRKVQRLAQSGVLVVSDRFPQAEISGFYYDGPGIGVERATGKISMFLAQRERRLYQQMAQYRPELIIRLGIDIETAISRKPDHDYAELQDKIGVMSKIGYNGTKILEIDSRAPYSEVLEQAQKAVSLVAIVSDRRSLT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDALQTQTVNSTTAPQPNYIPGLIAVVGCDGTGKSTLTTDLVKSLQQHWQTERRYLGLLSGEDGDKIKRLPLVGVWLERRLAAKSSKTQSMKTKSPALWAAVIMYCFSLRRMANLRKVQRLAQSGVLVVSDRFPQAEISGFYYDGPGIGVERATGKISMFLAQRERRLYQQMAQYRPELIIRLGIDIETAISRKPDHDYAELQDKIGVMSKIGYNGTKILEIDSRAPYSEVLEQAQKAVSLVAIVSDRRSLT
CCCCCCCCCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MDALQTQTVNSTTAPQPNYIPGLIAVVGCDGTGKSTLTTDLVKSLQQHWQTERRYLGLLSGEDGDKIKRLPLVGVWLERRLAAKSSKTQSMKTKSPALWAAVIMYCFSLRRMANLRKVQRLAQSGVLVVSDRFPQAEISGFYYDGPGIGVERATGKISMFLAQRERRLYQQMAQYRPELIIRLGIDIETAISRKPDHDYAELQDKIGVMSKIGYNGTKILEIDSRAPYSEVLEQAQKAVSLVAIVSDRRSLT
554233322302212223211100001003111111002200300243232221111222131022133122222211220123223232242422111000000000021111022013104301000002012131100001022011320002001001211220022123130100000001131013232333122022100101201232220010103111220032013001101121234334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMDALQTQTVNSTTAPQPNYIPGLIAVVGCDGTGKSTLTTDLVKSLQQHWQTERRYLGLLSGEDGDKIKRLPLVGVWLERRLAAKSSKTQSMKTKSPALWAAVIMYCFSLRRMANLRKVQRLAQSGVLVVSDRFPQAEISGFYYDGPGIGVERATGKISMFLAQRERRLYQQMAQYRPELIIRLGIDIETAISRKPDHDYAELQDKIGVMSKIGYNGTKILEIDSRAPYSEVLEQAQKAVSLVAIVSDRRSLT
1MUSTER3lv8A0.1750.7941.993threading_1-------------------NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITR----TREPGGTLLAEKLRALVKE------------EHPGEELQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQ---AYQGGGRQIA------PSTMQSLKQTALG---DFKPDLTLYLDIDPKLGLERRIEKMDISFFERARERYLELANDDSVVMIDAAQSIEQVTADIRRALQDWLSQVN-----
2SPARKS2wwfa0.1770.8063.611threading_2------------HMTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV--EVKHLYFPNR-----------ETGIGQIISKYLKMENSMS-------NETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGV---AYSSGALNLN------KTWCMNPDQ------GLIKPDVVFYLNVPPNYAQNRSDYGEKVETQKKIYETYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKIK--VEPEEFN
3PROSPECT23lv8A0.1760.7902.377threading_3-------------------NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLL---------AEKLRALVK--------EEHPGEELQDITELLLVYAARVQLVENIKPALARGEWVVGDRHDMSSQ---AYQGGGRQIA------PSTMQSLKQTAL---GDFKPDLTLYLDIDPKLGLERELDMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWL-----SQVN
4PPA-I3lv8A0.1850.7942.436threading_4-------------------NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDH-ITRTREPG------------GTLLAEKLRALVK---EEHPGEELQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQ---AYQGGGRQIA---------PSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERELDMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQVN-----
5HHPRED-l2v54_A0.1650.7702.598threading_5-----------------MSRGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQSTVTGKMIDDYLTRK---------------------KTYNDHIVNLLFCANRWEFASFIQEQLEQGITLIVDRYAFSGVAYAAAK----------GASMTLSKSYE------SGLPKPDLVIFLESGSKEINRNVGEEIYETFQQKVLQEYKKMIEEIHWQIISSEFEEDVKKELIKNIVIEAIHTVTG-PV-
6HHPRED-g4tmk_A0.1800.7942.804threading_6-------------------RSKYIVIEGLEGAGKTTARNVVVETLEQLGIR-DMVFTREPG------------GTQLAEKLRSLLLDIKSV-GDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLST---QAYQGGGRGIDQHMLATLRDAV---------LGDFRPDLTLYLDVTPEVGLKRAIEQESFDFFNRTRYLELAAQDK-SIHTIDATQPLEAVMDAIRTTVTHWVKEL------
7SP32wwfa0.1830.8023.677threading_7M-------------TDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV--EVKHLYFPNR-----------ETGIGQIISKYLKMENSMS-------NETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGV---AYSSGALNLN------KTWCMNPDQ------GLIKPDVVFYLNVPPNYAQNRSDYGEKVETQKKIYETYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKIKV--EPEEFN
8SAM-T993hjnA0.1990.7383.977threading_8---------------------MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVT---------------------PKAELFLFLASRNLLVTE-IKQYLSEGYAVLLDRYTDSSVA---YQGFGRNLGKEIVEELN---------DFATDGLIPDLTFYIDVDVETALKRKNRFEKREFLERVREGYLVLEHPERIVVLDGKRSIEEIHRDVVREVKR-----------
9MUSTER4tmkA0.1840.7981.954threading_9-------------------RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF----TREPGGTQLAEKLRSLLLD----------IKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQ---AYQGGGRGID------QHMLATLRDAVLG---DFRPDLTLYLDVTPEVGLKRAREQESFDFFNRTRARYLELAADKSIHTIDATQPLEAVMDAIRTTVTHWVKEL------
10SPARKS4tmka0.1890.7983.166threading_10-------------------RSKYIVIEGLEGAGKTTARNVVVETLEQLGI-RDMVFTREPG------------GTQLAEKLRSLLLDIKSVGDE-VITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQ---AYQGGGRGID------QHMLATLRDAVL---GDFRPDLTLYLDVTPEVGLKRARARGFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKEL------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.815 to 4tmkA
SCOP code=c.37.1.1
TM-score=0.820 to 4tmkA
SCOP code=c.37.1.1
TM-score=0.802 to 1e2fA
SCOP code=c.37.1.1
TM-score=0.826 to 4tmkA
SCOP code=c.37.1.1
TM-score=0.830 to 4tmkA
SCOP code=c.37.1.1