Template-based Modeling Results for YGHQ_ECOLI

Submitted Primary Sequence

>Length 355
MAGFNIKHWFADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIVQSYAKSISDFIKFQTWQLVVQYGTPALTNNNPQQFRNVVSFSFSLDIVSGAVAIVGGIALLPFLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDRFDLIAVQQATKPFLRAAGSVVAWYFDFGFAGFVIAWYVSNLVGGTMYWWFAARELRRRNIHNAFKLNLFESARYIKGAWSFVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFKIAMTFFDAAGTPAGLLGKSFYPEVMRLDPRTTRPWLLGVKSGLLAGGIGILVALAVLIVGKPLISLVFGVKYLEAYDLI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAGFNIKHWFADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIVQSYAKSISDFIKFQTWQLVVQYGTPALTNNNPQQFRNVVSFSFSLDIVSGAVAIVGGIALLPFLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDRFDLIAVQQATKPFLRAAGSVVAWYFDFGFAGFVIAWYVSNLVGGTMYWWFAARELRRRNIHNAFKLNLFESARYIKGAWSFVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFKIAMTFFDAAGTPAGLLGKSFYPEVMRLDPRTTRPWLLGVKSGLLAGGIGILVALAVLIVGKPLISLVFGVKYLEAYDLI
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAGFNIKHWFADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIVQSYAKSISDFIKFQTWQLVVQYGTPALTNNNPQQFRNVVSFSFSLDIVSGAVAIVGGIALLPFLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDRFDLIAVQQATKPFLRAAGSVVAWYFDFGFAGFVIAWYVSNLVGGTMYWWFAARELRRRNIHNAFKLNLFESARYIKGAWSFVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFKIAMTFFDAAGTPAGLLGKSFYPEVMRLDPRTTRPWLLGVKSGLLAGGIGILVALAVLIVGKPLISLVFGVKYLEAYDLI
5522313210021001100210010000100000000000000031010210000000100020012003120121003100201233223102100000000000000000000000000003101122200000000000000102001100010011001000120021002000000000020110000000000100000000000011023221231031201300320310000001010110010022101100000000100000020011002000100110020000200312242232210001001011000000000010001000000000101202324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAGFNIKHWFADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIVQSYAKSISDFIKFQTWQLVVQYGTPALTNNNPQQFRNVVSFSFSLDIVSGAVAIVGGIALLPFLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDRFDLIAVQQATKPFLRAAGSVVAWYFDFGFAGFVIAWYVSNLVGGTMYWWFAARELRRRNIHNAFKLNLFESARYIKGAWSFVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFKIAMTFFDAAGTPAGLLGKSFYPEVMRLDPRTTRPWLLGVKSGLLAGGIGILVALAVLIVGKPLISLVFGVKYLEAYDLI
1	PROSPECT2	1jdha	0.068	1.000	1.692	threading_1	KKEASRHAIMRSPQMVSAIEGLLAIFKSGGIPALVKMFYAITTLHNLLLHQEGAKMAVRLGLQKMVALLNKTNVKFLAIDCLQILAYGNQESKLIILAPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHDPSQRLVQNCLWTLRNLSMEGLLGTLVQLCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREAIPRLVQLLVRAMEEIVEGCTGALHILARDVHNRIVIRPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT
2	PPA-I	3g61A1	0.087	0.907	1.501	threading_2	-------------------VSVLTMFWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKL---EEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQ----IHKIRQKFFHAIMGWFDVHDVNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRIGQ-VLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSI---DSFSGWQLTLLLLAIVPIIAIAGV---VEMKMLSGQALKDKKELEGSGKIATEAIENRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFQAMMYFSYAACFRFGAYLV
3	HHPRED-l	3mkt_A	0.107	0.972	7.952	threading_3	---ENSVH-RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWLPSIL-FGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGELGGVGCGVATAIVYWIMLLLLLFYIVTSKRL-AHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVALAMQL-
4	HHPRED-g	3mkt_A	0.105	0.966	8.159	threading_4	---ENSVH-RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWLPSI-LFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGELGGVGCGVATAIVYWIMLLLLLFYIV----TSKRVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVALAMQLL
5	PROSPECT2	1ee4a	0.099	0.935	1.645	threading_5	EHRPPIDVVIQAGVVPRLVEQTKVVVDADAVPLFIQLLYKEQAIWAL-------GNVAGDSTDYRDYVLQCNAMEPILGLFN----SNKPSLIRTATWLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE---TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQNRIIEVTLDALENILKMGEADKEARGLNIN-------ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY--F
6	PPA-I	3zuxA	0.089	0.825	1.202	threading_6	----------------NILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTL------------------KPSDFDILFKH-PKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCC-----PGGTASNVMTYLAVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGS--------------------KTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWT--GLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAVPGALFSVWHNISGSLL
7	HHPRED-l	3mkt_A	0.080	0.637	2.965	threading_7	SKHVKVFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVFMFP-MSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENLAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYVLGLPTGYILGTNWLGAKGFWLGFIIGLSAAALMLGQRLYWLQ---------KQS--DDVQ-LHLAAK-------------------------------------------------------------------------------------------------------------------
8	HHPRED-g	3mkt_A	0.084	0.637	3.062	threading_8	SKRAHVKHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVFMFP-MSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYVLGLPTGYILGTNWLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQS-DDVQLHL-------AAK-----------------------------------------------------------------------------------------------------------------------
9	PROSPECT2	3a6pA1	0.071	0.955	1.632	threading_9	AKTQVAIRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENH-IKDALSRIVVEMIWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTDWVSMSHITAENCKLLEILCLLLNELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQ---------------TADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSTPSNFGKYLESFLAFTPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFVMRLACRLDPKTSFQMAGEWLKYQLSTF
10	PPA-I	1is2A2	0.096	0.969	1.126	threading_10	SATFNPHILDGSPENTRRRREIENLILNDPDFQKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQ----SEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHS-SGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSVDINSLEGLTEAYKLRAARLVEIAAKNLQT------HVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKIQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIGAQLSQVNARILELLTLI

Predicted Tertiary Structure


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TM-score=0.428 to 1h6gA SCOP code=a.24.9.1	TM-score=0.741 to 1xm9A SCOP code=a.118.1.24	TM-score=0.446 to 1h6gA SCOP code=a.24.9.1	TM-score=0.434 to 1h2sB SCOP code=f.17.4.1	TM-score=0.438 to 1h2sB SCOP code=f.17.4.1