Template-based Modeling Results for YGHO_ECOLI

Submitted Primary Sequence

>Length 366
NKNDLKAFIAFPSSLYPDDPNWIPPLFIERNEHLSAKNPGTDHIIWQAWVAKKAGQIVGRITAQIDTLHRERYGKDTGHFGMIDAIDDPQVFAALFGAAEAWLKSQGASKISGPFSLNINQESGLLIEGFDTPPCAMMPHGKPWYAAHIEQLGYHKGIDLLAWWMQRTDLTFSPALKKLMDQVRKKVTIRCINRQRFAEEMQILREIFNSGWQHNWGFVPFTEHEFATMGDQLKYLVPDDMIYIAEIDSAPCAFIVGLPNINEAIADLNGSLFPFGWAKLLWRLKVSGVRTARVPLMGVRDEYQFSRIGPVIALLLIEALRDPFARRKIDALEMSWILETNTGMNNMLERIGAEPYKRYRLYEKQI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
NKNDLKAFIAFPSSLYPDDPNWIPPLFIERNEHLSAKNPGTDHIIWQAWVAKKAGQIVGRITAQIDTLHRERYGKDTGHFGMIDAIDDPQVFAALFGAAEAWLKSQGASKISGPFSLNINQESGLLIEGFDTPPCAMMPHGKPWYAAHIEQLGYHKGIDLLAWWMQRTDLTFSPALKKLMDQVRKKVTIRCINRQRFAEEMQILREIFNSGWQHNWGFVPFTEHEFATMGDQLKYLVPDDMIYIAEIDSAPCAFIVGLPNINEAIADLNGSLFPFGWAKLLWRLKVSGVRTARVPLMGVRDEYQFSRIGPVIALLLIEALRDPFARRKIDALEMSWILETNTGMNNMLERIGAEPYKRYRLYEKQI
CHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCEEEEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
NKNDLKAFIAFPSSLYPDDPNWIPPLFIERNEHLSAKNPGTDHIIWQAWVAKKAGQIVGRITAQIDTLHRERYGKDTGHFGMIDAIDDPQVFAALFGAAEAWLKSQGASKISGPFSLNINQESGLLIEGFDTPPCAMMPHGKPWYAAHIEQLGYHKGIDLLAWWMQRTDLTFSPALKKLMDQVRKKVTIRCINRQRFAEEMQILREIFNSGWQHNWGFVPFTEHEFATMGDQLKYLVPDDMIYIAEIDSAPCAFIVGLPNINEAIADLNGSLFPFGWAKLLWRLKVSGVRTARVPLMGVRDEYQFSRIGPVIALLLIEALRDPFARRKIDALEMSWILETNTGMNNMLERIGAEPYKRYRLYEKQI
543102200200110043132100101221132014311003201000000122311000000000221223223210000001012123001000100120033221210100010111220000020022110011010220001003402122011000010222323123002200220343020111333302210310020001004301110202331012002102200231000001124100000000010120013022200110001001212122122010000002330231201000001002102300242412001000001212100200340212111201111254
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	NKNDLKAFIAFPSSLYPDDPNWIPPLFIERNEHLSAKNPGTDHIIWQAWVAKKAGQIVGRITAQIDTLHRERYGKDTGHFGMIDAIDDPQVFAALFGAAEAWLKSQGASKISGPFSLNINQESGLLIEGFDTPPCAMMPHGKPWYAAHIEQLGYHKGIDLLAWWMQRTDLTFSPALKKLMDQVRKKVTIRCINRQRFAEEMQILREIFNSGWQHNWGFVPFTEHEFATMGDQLKYLVPDDMIYIAEIDSAPCAFIVGLPNINEAIADLNGSLFPFGWAKLLWRLKVSGVRTARVPLMGVRDEYQFSRIGPVIALLLIEALRDPFARRKIDALEMSWILETNTGMNNMLERIGAEPYKRYRLYEKQI
1	MUSTER	2wpxA	0.145	0.828	1.397	threading_1	DDETVGQWLDLMALAAETGPRAAPPCNVDMVGSLRFAPP---ATALDDWVVRSGGRVVGALRLAL------PDGAPTARVDQLLVHPGRGIGRALWAHARELARKHDRTTLTA-----------TVVESLPSGPAQD-----PGPAAFAAAMGAHRSPAGTHQWLDLDRHDPLA----GVPAVPAGYSLVTWGTITPDEYAVPVSELE------LRAAQEVRTSYARQFETMRVGRGRRAYHTGAVHDGALAGYTSVSKT-------------------------TGNPAYALQGMTVVHREHRGHALGTLLKLANLEYVLRHE--PEVR-LVETANAEDNHPMIAVNAALGFEPYDRWVFWTAEA
2	SPARKS	1ozpa	0.145	0.770	2.576	threading_2	TADEQRSVRALVTATTAVDG--VAPVGEQVLRELGQQ----RTEHLLVAGSRPGGPIIGYLNLS-------PPGGAMAELVVHPQSRRRGIGTAMARAALAKTAGRNQFWAHG---------------------------TLDPARATASALGLVGVRELIQMRRPLRDIPEPT--------IPDGVVIRTYAG---TSDDAELLRVNNAAFAGHPEQGGWTAVQLAERRGE--AWFDPDGLILAFGDGRLLGFHWTKVH-------------------------PDHPGLGEVYVLGVDPAAQRRGLGQMLTSIGIVSLARR---LVEPAVLLYVE-SDNVAAVRTYQSLGFTTYSVDTAYAL--
3	PROSPECT2	1ozpA	0.138	0.770	2.275	threading_3	TADEQRSVRALVTATTAVDGV--APVGEQVLRELGQQR----TEHLLVAGSRPGGPIIGYLNLS-------PPGGAMAELVVHPQSRRRGIGTAMARAALAK---------------------------TAGRNQFWAHGTLDPARATASALGLVGVRELIQMRRPLRDIPEPTI--------PDGVVIRTYAG---TSDDAELLRVNNAAFAGHPEQGGWTAVQLAERRGE--AWFDPDGLILAFGDGRLLGFHWTKVH-------------------------PDHPGLGEVYVLGVDPAAQRRGLGQMLTSIGIVSLARR----LVEPAVLLYVESDNVAAVRTYQSLGFTTYSVDTAYA--L
4	PPA-I	2wpxA	0.140	0.842	3.181	threading_4	DDETVGQWLDLMALAAETGPRAAPPCNVDMVGSLRFAPP---ATALDDWVVRSGGRVVGALRLAL------PDGAPTARVDQLLVHPGRGIGRALWAHARELARKHDRTTLTA-----------TVVESLPSGPAQD-----PGPAAFAAAMGAHRSDIPAGTHQWLDLDRHDPL-ADGVPAVPAGYSLVTWGTITPDEYAVPVSELEL----RAAQEVRTSYARQFETMRVGRGRRAYHTGAVHDATGALAGYTSVSKT-------------------------TGNPAYALQGMTVVHREHRGHALGTLLKLANLEYVLRHEPEVR---LVETANAEDNHPMIAVNAALGFEPYDRWVFWTAEA
5	HHPRED-l	2wpx_A	0.141	0.833	2.235	threading_5	DDETVGQWLDLMALAAETGPRAAPPCNVDMVGSLRFAPP---ATALDDWVVRSGGRVVGALRLALP------DGAPTARVDLLVHPRRRGIGRALWAHARELARKHDRTTLTATVVESL-PS------G---------PAQDPGPAAFAAAMGAHRSDIPAGTHQWLDLDRHDPLADG-VPAVPAGYSLVTWGTITPDEYAVPVSELEL------RAAQEVRTSYARQFETMRVGRGRRAYHTGAVHTGALAGYTSVSKT-------------------------TGNPAYALQGMTVVHREHRGHALGTLLKLANLEYVLRH--EPEVRLVET-ANAEDNHPMIAVNAALGFEPYDRWVFWTAE-
6	HHPRED-g	2wpx_A	0.137	0.836	2.049	threading_6	DDETVGQWLDLMALAAETGPRAAPPCNVDMVGSLRFAPP---ATALDDWVVRSGGRVVGALRLALP------DGAPTARVDLLPGRRRRGIGRALWAHARELARKHDRTTLTATVV-ESLPS-G--------------PAQDPGPAAFAAAMGAHRSDIPAGTHQWLDLDRHDPLA-DGVPAVPAGYSLVTWGTITPDEYAVPVSELEL------RAAQEVRTSYARQFETMRVGRGRRAYHTGAVHTGALAGYTSVSKTT-------------------------GNPAYALQGMTVVHREHRGHALGTLLKLANLEYVLRH--EPEVRLV-ETANAEDNHPMIAVNAALGFEPYDRWVFWTAEA
7	SP3	1ozpa	0.142	0.770	2.526	threading_7	TADEQRSVRALVTATTAVDG--VAPVGEQVLRELGQQ----RTEHLLVAGSRPGGPIIGYLNLS-------PPGGAMAELVVHPQSRRRGIGTAMARAALAKTAGRN------------------QFWAH---------GTLDPARATASALGLVGVRELIQMRRPLRDIPEPT--------IPDGVVIRTYAG---TSDDAELLRVNNAAFAGHPEQGGWTAVQLAERRGE--AWFDPDGLILAFGDGRLLGFHWTK-------------------------VHPDHPGLGEVYVLGVDPAAQRRGLGQMLTSIGIVSLARRL---VEPAVLLYVE-SDNVAAVRTYQSLGFTTYSVDTAYA--L
8	SAM-T99	3tt2A	0.163	0.689	2.136	threading_8	---------------------------------------GLDLGQEAVLVVAPDGE------AAAYADVLNRRYVQLSVYGYVHPRFRGGLGTWLVQWGEEWIQDRHLAPAEAQVTVQHYIR------------------ASSTSALRLEQHGYRPVRDIWVAITLD----QPPPAPEWPEGITARTFVPGLDE-------RATYEAVEEAF----GRPPSTFERWLSTQSERK---DPELWLLATDSGHIVGTCLG----------------------------QETAGKGWIGSVGVRRPWRGRGIALALLQEVFGVYY----RRGVREVELSVDAESRTGAPRLYRRAGHVKHR-YVLHRKEI
9	MUSTER	2c27A	0.136	0.784	1.347	threading_9	TADEQRSVRALVTATTAVDG--VAPVGEQVLRELGQQR-------TEHLLVAGSGPIIGYLNLSPPR----GAGGAMAELVVHPQSRRRGIGTAMARAALAKTAGR----------------NQFWAHG-----------TLDPARATASALGLVGVRELIQMRRPLRDIPEPT--------IPDGVVIRTYAGTS---DDAELLRVNNAAFAGHPEQGGWTAVQLAERRGE--AWFDPDGLILAFGPGRLLGFHWTKVH-------------------------PDHPGLGEVYVLGVDPAAQRRGLGQMLTSIGIVSLARRLLDPAVEPAVLLYVESDNVAAVRTYQSLGFTTYSVDTAYALA-
10	SPARKS	3tt2a	0.145	0.790	2.254	threading_10	VPADAPAIARLIAACQEADGDEPDASAEEVLRDWEG----LDLGQEAVLVVAPDGEAAAYADVLN------RRYVQLSVYGYVHPRFRGGLGTWLVQWGEEWIQDRHL---------APAEAQVTVQHYIRAS---------STSALRLEQHGYRPVRDIWVAITLDQPPPAPE--------WPEGITARTFVPGL---DERATYEAVEEAF----GRPPSTFERWLST-QSERKDPELWLLAVETDSGHIVGTCLG----------------------------QETAGKGWIGSVGVRRPWRGRGIALALLQEVFGVYYR----RGVREVELSVDAESRTGAPRLYRRAGHVKH-RYVLHRKEI

Predicted Tertiary Structure


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TM-score=0.708 to 2c27A SCOP code=d.108.1.1	TM-score=0.697 to 2c27A SCOP code=d.108.1.1	TM-score=0.664 to 2c27A SCOP code=d.108.1.1	TM-score=0.670 to 2c27A SCOP code=d.108.1.1	TM-score=0.707 to 2c27A SCOP code=d.108.1.1