Template-based Modeling Results for YGHF_ECOLI

Submitted Primary Sequence

>Length 288
MFWLMLLIISAKMAHSLWRYISFSAEYTAVSQPVNKPSRVDAKTFDKNDVQLISQQNWFGKYQPVAAQVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAVSVPVEIPAAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAAKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALRYRLFCPPYWKKS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFWLMLLIISAKMAHSLWRYISFSAEYTAVSQPVNKPSRVDAKTFDKNDVQLISQQNWFGKYQPVAAQVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAVSVPVEIPAAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAAKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALRYRLFCPPYWKKS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCEEEEEECCCEECCCCEEEEEECCCCEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCEEEEEECCCCCHHHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFWLMLLIISAKMAHSLWRYISFSAEYTAVSQPVNKPSRVDAKTFDKNDVQLISQQNWFGKYQPVAAQVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAVSVPVEIPAAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAAKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALRYRLFCPPYWKKS
321000000001000000200212132222132223224232422322102101211111333222232332332322323120101000012520000122222100111220232202012023210102231211200113333232222233222332332223222222232222022111311230111010001133101000022123320022020330000000142202213101200330332220202011321312010102222323322445
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFWLMLLIISAKMAHSLWRYISFSAEYTAVSQPVNKPSRVDAKTFDKNDVQLISQQNWFGKYQPVAAQVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAVSVPVEIPAAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAAKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALRYRLFCPPYWKKS
1	MUSTER	3stjA	0.143	0.924	1.146	threading_1	L-------LAPMLEKVLPAVVSVRVEGTQPFEGLGSGVIINASKNQAQKISQLNDGREFGSDDQNPSKLTQIAIADSDKLRVGDFAVAVGNQTATSGIVSALGRSGLNLEGENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNL-----DVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS----------
2	SPARKS	3qo6a	0.132	0.840	3.088	threading_2	I-----------------------RGASDLRVTLADQTTFDAGFDQDKDVAVLRIDAPKKLRPIPVGVSADLLVGQKVFAIGNFGLDHTLT----TGVISGLRREISSAATQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKFA--PDQSVEQLGVS--------GVLVLDAPPSGPAGKAGLQSGDIITSVNGTKVSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVTLEPKP---------
3	PROSPECT2	1y8tA	0.087	0.875	1.877	threading_3	G-------SVEQVAAKVVPSVVLETDLEEGSAAAAPKTTVTFSDGRTAPFTVVGADPTSDVQGVSGLTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTN----TVLDAIQTDASGGALVNNAQLVGVNSAI---------------ATLQSGSIGLGFAIPVDQAKRIADELISTGKASHASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDSGGSRTVQVTLG----------KA
4	PPA-I	2l97A	0.110	0.441	1.323	threading_4	------------------------------------------------------------------------------------------------------------------------------------------------------MEGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPA-NGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNKL----------
5	HHPRED-l	2i4s_A	0.388	0.340	2.365	threading_5	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-EDKVDAIREAIARNPQEIFQYVRLSQVKRDDVLGYRVSPGKDPVLFESIGLQDGD-AVALNGLDLTDPNV-NTLFQS-NE-TE-SLTVERDGQQHDVYIQF-------------
6	HHPRED-g	1ky9_A	0.142	0.882	3.286	threading_6	QFGSGVIIDADGYVVTNNHVVDNATVIKVQLSDGRKFDAK-VGKDPRSDIALIQIQNPKNLTAIK-ADSDALRVGDYTVAIGNFGLGETVTSGIVSALGRSG--------YENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN-VKNLTSQ-VEYGQVKRGELGI-GTELNSELAKA-KVD-----AQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGT-PVGSKLTLGLLRDGKQVNVNLE--------------
7	SP3	3qo6a	0.132	0.920	3.256	threading_7	LQELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQRGASFDQDKDVAVLRIDAPKKLRPIPVGVSADLLVGQKVFAIGNFGLDHTLT----TGVISGLRREISSAATQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKFA--PDQSVEQLGV--------SGVLVLDAPPSGPAGKAGLQSGDIITSVNGTKVSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVTLEPKP---------
8	SAM-T99	2zleB	0.185	0.656	3.566	threading_8	-------------------------------NPKNLTAIKMADSDALRVGDYTVAINPFGLGETVALGRENFIQTDA----------AINRGNSGGALVNLNGE---------LIGINTAILA--------------------------------------PDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGISELAKADQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQ-----------
9	MUSTER	1te0A	0.095	0.955	1.098	threading_9	SYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGNDADQIIALQDGRVFGSDSLATGGLPTIPINARRVPHIGDVVLAIG-QTITQGIISATGRIGLNPTGQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGI-----DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPAT-------
10	SPARKS	3pv2a	0.124	0.837	2.995	threading_10	I-----------------------RNASLITVTLQDGRRLKAGGDSETDLAVLK-IDAKNLKSLVIGDSDKLEVGDFVVAIGNFGLSQSAT----FGIVSAL---------KNFIQTDAAINPGNSGGALVNAKGELIGINTAILV------GIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGY----PEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSN

Predicted Tertiary Structure


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TM-score=0.730 to 2z9iA SCOP code=b.36.1.4	TM-score=0.839 to 2z9iA SCOP code=b.36.1.4	TM-score=0.640 to 2zleB SCOP code=b.36.1.4	TM-score=0.830 to 2z9iA SCOP code=b.36.1.4	TM-score=0.483 to 2z9iA SCOP code=b.36.1.4