Template-based Modeling Results for YGHD_ECOLI


  Submitted Primary Sequence

>Length 178
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
5423101111120142112301200120122212213001100000000000001112111220221132133112112202200220131242222222302200120033230201101342320101012020310020022013313120210101214430201020011147
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
1MUSTER1uv7A0.3700.4101.350threading_1---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG
2PROSPECT21vid_0.0820.9611.066threading_2TKEQRILRYVQQNAQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSAVRMARLLQNPDYAAITQQMLNFATILNGASQDLIPQLKKKYDVDTDHWKDRYLPDTLLLEKCGLLRKG-------TVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYGPS
3PROSPECT21vctA0.1210.9271.010threading_3KSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEGVELH-----PVIKETILEGEEIIGKIQVYPES---VIVGKTLGEL-----DLATNTGVWIIAVRWIFGPNENIGRGTRTSIDHG
4SPARKS1uv7a0.3700.4101.684threading_4---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG
5PROSPECT21uv7A0.3700.4101.254threading_5---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG
6PPA-I1uv7A0.3700.4102.816threading_6---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG
7HHPRED-l1uv7_A0.3470.4047.193threading_7---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDRG----VVEVKRLQLKR-
8HHPRED-g1uv7_A0.3560.4106.543threading_8---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDRG----VVEVKRLQLKRG
9SP31uv7a0.3700.4100.661threading_9---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG
10SAM-T991uv7A0.3700.4103.418threading_10---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.686 to 1uv7A
SCOP code=d.67.4.1
TM-score=0.599 to 1i9gA
SCOP code=c.66.1.13
TM-score=0.686 to 1uv7A
SCOP code=d.67.4.1
TM-score=0.844 to 2bkpA
SCOP code=a.7.12.1
TM-score=0.686 to 1uv7A
SCOP code=d.67.4.1