Template-based Modeling Results for YGGS_ECOLI

Submitted Primary Sequence

>Length 234
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHCCCCEEEECCCEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
343013002201310120033032223201000002232120002003011220022102201310320341122101000002121210120042010000011220022012103333220100010102333132222121012002001303202010000011142212200200220020011133312302100110232030002110100100000113332349
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
1	MUSTER	1w8gA	1.000	0.966	3.286	threading_1	--DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGA------
2	SPARKS	3r79a	0.373	0.940	6.216	threading_2	--EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEK-TSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLC-IPPAEENPGPHFALLAKLAGQ----------CGLEKLSGSGDFETAVEFGATSVRVGSAIFGSRAENLY
3	PROSPECT2	3r79A	0.368	0.940	4.408	threading_3	--EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEK-TSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLCIPPAEENP----GPHFALLAKLAGQC-------GLEKLSGSGDFETAVEFGATSVRVGSAIFGSRAEQSH
4	PPA-I	1w8gA	1.000	0.966	3.957	threading_4	--DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGA------
5	HHPRED-l	3sy1_A	0.947	0.970	3.626	threading_5	MNDIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFAGPLQSNKSRLVAEHFDWCITIDRLRIATRLNDQRPA-ELPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLALGQSDDMEAAIAAGSTMVAIGTAIFGA------
6	HHPRED-g	1ct5_A	0.374	0.880	6.095	threading_6	KTQLIAQYESVREVVNAEAKN------KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLP----DDIKWHFIGGLQTNKCKDLAKVPYSVETIDSLKKAKKLNESRAKFQPPILCNVQINTSHEDQKSGLNNEEIFEVIDFFEECKYIKLNGL-TIGSWN-------RDFATLVEWKKKIDAKFGTSLKLS---SADFREAIRQGTAEVRIGTDIFG-------
7	SP3	3r79a	0.368	0.940	6.131	threading_7	--EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEK-TSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLCIPPAEENP----GPHFALLAKLAGQ-------CGLEKLSGSGDFETAVEFGATSVRVGSAIFGSRAENLY
8	SAM-T99	1w8gA	1.000	0.966	7.392	threading_8	--DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGA------
9	MUSTER	3r79A	0.368	0.940	3.243	threading_9	--EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEK-TSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLCIPPAEEN----PGPHFALLAKLAGQCG-------LEKLSGSGDFETAVEFGATSVRVGSAIFGSRAENLY
10	SPARKS	1w8ga	1.000	0.966	6.102	threading_10	--DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGA------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.857 to 1b54A TM-score=0.999 to native SCOP code=c.1.6.2	TM-score=0.857 to 1b54A TM-score=0.999 to native SCOP code=c.1.6.2	TM-score=0.835 to 1b54A TM-score=0.894 to native SCOP code=c.1.6.2	TM-score=0.837 to 1b54A TM-score=0.896 to native SCOP code=c.1.6.2	TM-score=0.857 to 1b54A TM-score=0.999 to native SCOP code=c.1.6.2

Experimental Structure

Download 1w8gA

SCOP code=c.1.6.2