Template-based Modeling Results for YGGR_ECOLI

Submitted Primary Sequence

>Length 326
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDTPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQHRVGEGRL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDTPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQHRVGEGRL
CCHHHHHHHHHHCCCCEEEECCCCCEEEEECCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCHHHCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCEECCCCCEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDTPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQHRVGEGRL
45032001200433000000102110101021202213132310130024102331221034213000002033112000000223412100000022301303202012102200413300000000212110000000001013223110000211010112232000122311221220010011002311100000102113002000100210000000011210020022002101231231011100100210001200224341100001001113200200331223102201210232111201200122123244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDTPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQHRVGEGRL
1	MUSTER	3jvvA	0.460	0.988	3.917	threading_1	MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRIPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVARFRVNAFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFPAEEKAMVRSMLSESLQSVISQTLIK----KRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGSLGMQTLDMCLKGSRENARE
2	SPARKS	2ewva	0.419	0.982	6.732	threading_2	LKILEIIKEAIELGASDIHLTAGAPPAVRIDGYIKFLRLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGVGRFRANVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGGGRVLAYELLIPNTAIRNLIRENKLQQVYSLM------QMQTMNQTLYKLYKQGLI
3	PROSPECT2	3jvvA	0.460	0.988	5.809	threading_3	MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRPPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVARFRVNAFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFPAEEKAMVRSMLSESLQSVISQTLIK----KRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGSLGMQTLDMCLKGSRENARE
4	PPA-I	3jvvA	0.460	0.988	9.634	threading_4	MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRIPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVARFRVNAFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFPAEEKAMVRSMLSESLQSVISQTLIK----KRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGSLGMQTLDMCLKGSRENARE
5	HHPRED-l	2ewv_A	0.423	0.979	5.663	threading_5	LKILEIIKEAIELGASDIHLTAGAPPAVRIDGYIKFLKLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGVGRFRANVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGGGRVLAYELLIPNTAIRNLIRENKLQQVYSLMQ------MQTMNQTLYKLYKQGL-
6	HHPRED-g	2ewv_A	0.422	0.982	5.908	threading_6	LKILEIIKEAIELGASDIHLTAGAPPAVRIDGYIKFPRLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGVGRFRANVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGGGRVLAYELLIPNTAIRNLIRENKLQQVYSLMQ------MQTMNQTLYKLYKQGLI
7	SP3	2ewva	0.419	0.982	6.126	threading_7	LKILEIIKEAIELGASDIHLTAGAPPAVRIDGYIKFPRLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGVGRFRANVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGGGRVLAYELLIPNTAIRNLIRENKLQQVYSLM------QMQTMNQTLYKLYKQGLI
8	SAM-T99	3jvvA	0.457	0.988	8.105	threading_8	MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPLQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVARFRVNAFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFPAEEKAMVRSMLSESLQSVISQTLIKK----RVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGSLGMQTLDMCLKGSRENARE
9	MUSTER	2gszA	0.409	0.960	3.309	threading_9	LKILEIIKEAIELGASDIHLTAGAPPAVRIDGYIKFLRLTPEDTQKLAYSVS-EKHRQKLEENGQVDFSFGVRGVGRFRANVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCH-RKGLILVTGPTGSGKSTTIASIDYINQ-TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGE-RDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGGGRVLAYELLIPNTAIRNLIRENKLQQVYSLQ---------QTNQTLYKLYKQGLI
10	SPARKS	1p9ra	0.327	0.939	4.992	threading_10	IKLINALGEAIKEGASDIHIETFLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVAKLDIAEKRVPQDGRISLAV--DVRVSTPSSHGERVVRLLDKNATRLDLHSLGTADNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVEDPIEFDIDG----IGQTQVNPRVDTFARGLRAILRQDPD-VVVGEIRDLETAQIAVQASLTGH-LVSTLHTNTAVGAVTRLRDGIE-------PFLISSSLLGVLAQRLVRTLCPGRTGIHELLLVDDALQELIHSEAGEQAEKHIRA----TTPSIRDDGLDKVRQGIT

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.726 to 1p9wA SCOP code=c.37.1.11	TM-score=0.727 to 1p9wA SCOP code=c.37.1.11	TM-score=0.724 to 1p9wA SCOP code=c.37.1.11	TM-score=0.726 to 1p9wA SCOP code=c.37.1.11	TM-score=0.726 to 1p9wA SCOP code=c.37.1.11