Template-based Modeling Results for YGGP_ECOLI

Submitted Primary Sequence

>Length 425
MKTKVAAIYGKRDVRLRVFELPEITDNELLVSVISDSVCLSTWKAALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSGYSAGYSYEYFGGNATYMIIPEIAINLGCVLPYHGSYFAAASLAEPMCCIIGAYHANYHTTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQVQKLLPVELAASKGIELVYVNTKGMSDPVQMLRALTGDAGFDDIFVYAAVPAVVEMADELLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQLQPSFMVTHIGGLDAVPETVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKELARLVEETHGIWNEQAEKYLLAQFGVDIGEAAQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKTKVAAIYGKRDVRLRVFELPEITDNELLVSVISDSVCLSTWKAALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSGYSAGYSYEYFGGNATYMIIPEIAINLGCVLPYHGSYFAAASLAEPMCCIIGAYHANYHTTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQVQKLLPVELAASKGIELVYVNTKGMSDPVQMLRALTGDAGFDDIFVYAAVPAVVEMADELLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQLQPSFMVTHIGGLDAVPETVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKELARLVEETHGIWNEQAEKYLLAQFGVDIGEAAQ
CCCEEEEEECCCCEEEEEEECCCCCCCEEEEEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECHHHCCEEEEECCCCCCHHHHHCCCHHHHHEEHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCHHHEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTKVAAIYGKRDVRLRVFELPEITDNELLVSVISDSVCLSTWKAALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSGYSAGYSYEYFGGNATYMIIPEIAINLGCVLPYHGSYFAAASLAEPMCCIIGAYHANYHTTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQVQKLLPVELAASKGIELVYVNTKGMSDPVQMLRALTGDAGFDDIFVYAAVPAVVEMADELLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQLQPSFMVTHIGGLDAVPETVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKELARLVEETHGIWNEQAEKYLLAQFGVDIGEAAQ
55010000223430302202113134310000000000010002001211313311321331100010100000010044122413411100010001112021012123110110100001311021000002311211001001100000001102221221101220213311200000000000000000011121310200000013310210341211310113112000011322321120022112420010001001022002100200243010000001234322010101100221020100000112003200100221313022000100103101300220343320110011012020010210252142231032003003412110132012000221213224224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKTKVAAIYGKRDVRLRVFELPEITDNELLVSVISDSVCLSTWKAALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSGYSAGYSYEYFGGNATYMIIPEIAINLGCVLPYHGSYFAAASLAEPMCCIIGAYHANYHTTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQVQKLLPVELAASKGIELVYVNTKGMSDPVQMLRALTGDAGFDDIFVYAAVPAVVEMADELLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQLQPSFMVTHIGGLDAVPETVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKELARLVEETHGIWNEQAEKYLLAQFGVDIGEAAQ
1	MUSTER	1pl7A	0.203	0.800	2.288	threading_1	PNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYG----RIGNFIVKKPMVLGHEASGTVEKVGSSVKH-LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCCYKLPDNVTFEEGALIEPLSVG------------IHACRRGGVTLGHKVLVCG-AGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEIGAD-----------LVLQISKESPQEIARKVEGGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEM---TTVPLLHAAIREVDIKGVFRYC-NTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCD---P----------SDQNP-------------------------------------
2	SPARKS	3m6ia	0.172	0.795	3.639	threading_2	SKTIGVFTNPQHDLWISEASPEELKEGEVTVAVRSTGICGSDVHFWKHG----CIGPMIVECDHVLGHESAGEVIAVHPSVK-SIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRYVNHPGNMSYENGAMLEPLSVALAGLQRA------------GVRLGDPVLIC-GAGPIGLITMLCAKAAG--ACPLVITDIDEGRLKFAKEICPEVVTHKVE-------RLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNE---IQIPFMRASVREVDLQFQYRYC-NTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTIKVQIQSL--------------------------------------------------------
3	PROSPECT2	1e3ja	0.199	0.779	3.944	threading_3	-DNLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHG----RIADFIVKDPMVIGHEASGTVVKVGKNVK-HLKKGDRVAVEPGVPCRRCQFCKEGKYDDGNLARYYVHAADF----CHKLPDNVSLEEGALLEPLSVGVHAC------------RRAGVQLGTTVLVI-GAGPIGLVSVLAAKAYG---AFVVCTARSPRRLEVAKNCGAD---------VTLVVDPAKEEESSIIERIRIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMV---TVPLVNACAREIDIKSVFRYC-NDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARADNTIKVMISCR-------------------------------------------------------Q
4	PPA-I	1e3jA	0.197	0.788	3.070	threading_4	-DNLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHG----RIADFIVKDPMVIGHEASGTVVKVGKNVKH-LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLFCHKLPDNVSLEEGALLEPLSVGVHACRRAG------------VQLGT-TVLVIGAGPIGLVSVLAAKAYGA---FVVCTARSPRRLEVAKNCGAD---------VTLVVDPAKEEESSIIERIRSGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQM---VTVPLVNACAREIDIKSVFRYC-NDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADIKVMISCRQ-------------------------------------------------------
5	HHPRED-l	1kol_A	0.152	0.802	2.281	threading_5	-GNRGVVYLGSGKVEVQKIDYPKMIEHGVILKVVSTNICGSDQHMVRGRT--------TAQVGLVLGHEITGEVIEKGRDVEN-LQIGDLVSVPFNVACGRCRSCKEMHTGVCGQAEYVLVPYADF--NLLKLPDRDKAMEKI-------RDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGA-GPVGLAAAASARLLGA--AVVIVGDLNPARLAHAKAQGFEIADL-----------SLDTPLHEQIAALLGEPEVDCAVDAVGFATVLNSLMQVTRVAGKIGIPGLYVTEDPSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVVQVISLDDAPRGYGEFDAGVPKKFVIDPHKTFSA---------------------------------------------------
6	HHPRED-g	1e3j_A	0.202	0.793	1.946	threading_6	-DNLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHG----RIADFIVKDPMVIGHEASGTVVKVGKNVK-HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLACHKLPDNVSLEEGALLEPLSVGVHAC------------RRAGVQLGTTVLVI-GAGPIGLVSVLAAKAYG--A-FVVCTARSPRRLEVAKNCGADVTLVVDPAK------EEESSIIERIRS-AIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQ---MVTVPLVNACAREIDIKSVFRY-CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKATIKVMISCRQ-------------------------------------------------------
7	SP3	3m6ia	0.172	0.793	3.731	threading_7	SKTIGVFTNPQHDLWISEASPEELKEGEVTVAVRSTGICGSDVHFWKHG----CIGPMIVECDHVLGHESAGEVIAVHPSVK-SIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLVWCHKIGN-MSYENGAMLEPLSVALAGLQRA------------GVRLGDPVLIC-GAGPIGLITMLCAKAAG--ACPLVITDIDEGRLKFAKEICPEVV-------THKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNE---IQIPFMRASVREVDLQFQYRYC-NTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTIKVQIQSL--------------------------------------------------------
8	SAM-T99	1pl7A	0.201	0.772	2.733	threading_8	--NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYG----RIGNFIVKKPMVLGHEASGTVEKVGSSVKH-LKPGDRVAIEPGAPRENDEFCKMGRYNDGNLCRFYKHN----AAFCYKLPDNVTFEEGALIEPLSVGIHAC------------RRGGVTLGHKVLVC-GAGPIGMVTLLVAKAMGA--AQVVVTDLSATRLSKAKEIGAD----------LVLQISK-ESPQEIARKVEGGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEM---TTVPLLHAAIREVDIKGVFRY-CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCD--------------------------------------------------------
9	MUSTER	1e3jA	0.197	0.788	2.276	threading_9	-DNLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHG----RIADFIVKDPMVIGHEASGTVVKVGKNVKH-LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLACHKLPDNVSLEEGALLEPLSVG------------VHACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYG---AFVVCTARSPRRLEVAKNCGAD---------VTLVVDPAKEEESSIIERIRSGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQM---VTVPLVNACAREIDIKSVFRYC-NDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKNTIKVMISCRQ-------------------------------------------------------
10	SPARKS	1vj0a	0.176	0.791	3.397	threading_10	LKAHAMVLEKFNPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR-------VPLPIILGHEGAGRVVEVNGEKRDLLKPGDLIVWNRGITCGECYWCKVSKEPYLCYSSHIVLDPET---DVLKVSEKDDLDVLAMAMSGATAYHAFD-----------EYPESFAGKTVVIQ-GAGPLGLFGVVIARSLG--AENVIVIAGSPNRLKLAEEIGADLTLNRRETSV--------EERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQD-PVPFKVYWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREALKVILYPE--------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.863 to 1pl7A SCOP code=b.35.1.2	TM-score=0.846 to 1pl7A SCOP code=b.35.1.2	TM-score=0.838 to 1pl7A SCOP code=b.35.1.2	TM-score=0.803 to 1e3jA SCOP code=b.35.1.2	TM-score=0.861 to 1e3jA SCOP code=b.35.1.2