Template-based Modeling Results for YGGD_ECOLI


  Submitted Primary Sequence

>Length 169
MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP
5532213201210333331110010002002200320020002321230021002100342110320100010011003023200200210020031045233212111310020011010023211223224223122111101210200021000000120033124
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP
1MUSTER3brjB0.2350.9823.247threading_1--NINESEIIERLNSAPSVRGFFIATVDVFNESIDGLIQRIF-RKDNFAVQSVVGPLLQDSGPLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPIKKLHLVKKGVQLVNEPDDDIDLEFYQLQLQRQQQIIKSGLSLAIVEICNELGK
2SPARKS3brja0.2380.9706.187threading_2----NESEIIERLNSAPSVRGFFIATVDVFNESIDGLIQRIF-RKDNFAVQSVVGPLLQDSGPLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPIKKLHLVKKGVQLEVNPDDDIDLEFYQLQLQRQQQIIKSGLSLAIVEICNELGK
3PROSPECT23brjA0.2380.9702.817threading_3----NESEIIERLNSAPSVRGFFIATVDVFNESIDGLIQRIF-RKDNFAVQSVVGPLLQDSGPLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPIKKLHLVKKGVQLENEPDDDIDLEFYQLQLQRQQQIIKSGLSLAIVEICNELGK
4PPA-I3brjB0.2350.9825.196threading_4--NINESEIIERLNSAPSVRGFFIATVDVFNESIDGLIQRIF-RKDNFAVQSVVGPLLQDSGPLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPIKKLHLVKKGVQLENEPDDDIDLEFYQLQLQRQQQIIKSGLSLAIVEICNELGK
5HHPRED-l2hkt_A0.9620.9359.089threading_5-ATLTEDDVLEQLDAQDNLFSF-KTAHSILLQGIRQFLPSLF-VDDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGK-DKWLYADITHFSQYWHYLNEQDETPGFADDITWDFISNVNSITRNATLYDALKA-KF----VWSEARFSG-VKTALTLAVTTTLKELT-
6HHPRED-g2hkt_A0.9620.9357.621threading_6-ATLTEDDVLEQLDAQDNLFSF-KTAHSILLQGIRQFLPSLF-VDDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGK-DKWLYADITHFSQYWHYLNEQDETPGFADDITWDFISNVNSITRNATLYDALKA-KF----VWSEARFSG-VKTALTLAVTTTLKELT-
7SP33brja0.2380.9705.910threading_7----NESEIIERLNSAPSVRGFFIATVDVFNESIDGLIQRIF-RKDNFAVQSVVGPLLQDSGPLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPIKKLHLVKKGVQLEVNPDDDIDLEFYQLQLQRQQQIIKSGLSLAIVEICNELGK
8SAM-T993brjB0.2350.9828.347threading_8--NINESEIIERLNSAPSVRGFFIATVDVFNESIDGLIQRIFRK-DNFAVQSVVGPLLQDSGPLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPIKKLHLVKKGVQLENEPDDDIDLEFYQLQLQRQQQIIKSGLSLAIVEICNELGK
9MUSTER3c8gB0.9290.9232.573threading_9--TLTEDDVLEQLDAQDNLFSF--TAHSILLQGIRQFLPSLFVDNDEEIVEYAV-PLLAQSGPLDDIDVALRLIYALGKD-KWLYADITHFSQYWHYLNEQDETPGFADDITWDFISNVNSITRNATLY---DALAFADFAVWSEARFSGV--TALTLAVTTTLE-LT-
10SPARKS2hkta0.9500.9415.099threading_10-ATLTEDDVLEQLDAQDNLFSFK-TAHSILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGK-DKWLYADITHFSQYWHYLNEQDETPGFADDITWDFISNVNSITRNATLYDALKAK-----FVWSEARFS-GVKTALTLAVTTTLKELT-

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.954 to 3brjB
TM-score=0.839 to native
SCOP code=a.285.1.1		 TM-score=0.954 to 3brjB
TM-score=0.839 to native
SCOP code=a.285.1.1		 TM-score=0.904 to 3brjB
TM-score=0.838 to native
SCOP code=a.285.1.1		 TM-score=0.913 to 3brjB
TM-score=0.853 to native
SCOP code=a.285.1.1		 TM-score=0.944 to 3brjB
TM-score=0.836 to native
SCOP code=a.285.1.1

  Experimental Structure

Download 3c8gC
SCOP code=a.285.1.1