Template-based Modeling Results for YGGC_ECOLI

Submitted Primary Sequence

>Length 237
MKIELTVNGLKIQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFDVAKLTENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVEMTEEGRYHFTS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKIELTVNGLKIQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFDVAKLTENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVEMTEEGRYHFTS
CEEEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEECCCEEEEECHHHCCCCCCHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKIELTVNGLKIQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFDVAKLTENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVEMTEEGRYHFTS
321111131131312021310230020003001112323332100000001111010100200120033233221000000101121121021121331220121010210020022014231211101132321133212121100002001001333212100300101000102131012100112132212232012002311020022012223301000211331321124
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKIELTVNGLKIQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFDVAKLTENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVEMTEEGRYHFTS
1	MUSTER	3c8uA	0.290	0.844	2.599	threading_1	------------------GTLAALCQGVLERLD----PRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQ---GLPAEVVPDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQEVIYPLFDRARDIAIAGAAEVECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVP-ADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWP-----------
2	SPARKS	1esma	0.221	0.992	5.127	threading_2	LSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGL-KKKGFPESYDH-RLVKFVSDLKSGVVTAPVYSHLIYDVIPDGDKTQPDILILEGLNVLQSDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAIKTATLWKEINWLNLKQILPTRERASLILTKSANHAVEEVR
3	PROSPECT2	3c8uA	0.285	0.844	3.405	threading_3	GT----------------------LAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA---QGLPAEVVPDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQRVIYPLFDRARDIAIAGAAEVECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPADL-EARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTW-----------P
4	PPA-I	3c8uA	0.285	0.844	3.735	threading_4	----------------------GTLAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG---LPAEVVPDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQEVIYPLFDRARDIAIAGAAEVECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVP-ADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWP-----------
5	HHPRED-l	1sq5_A	0.247	0.958	2.823	threading_5	D-----LKGINE--DLSLEEVAEIYLPLSRLLNFYITN-QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVVTAPVYSHLIYDVIPDKTVV-PDILILEGLNVLQSGMDHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFKLTKEEAMTLWKEINWLNLKQNILPTRRASLILTKSANHAVEEV-
6	HHPRED-g	1sq5_A	0.225	0.996	5.912	threading_6	LSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSNQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGNVTAPVYSHLIYDVIPDGDKT-PDILILEGLNVLQSGMHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKKEEAIKTAMTLWKEINWLNLQNILPTRERASLILTKSANHAVEEVR
7	SP3	1esma	0.221	0.992	4.878	threading_7	LSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSNQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGL-KKKGFPESYDH-RLVKFVSDLKSGVVTAPVYSHLIYDVIPDGDKTQPDILILEGLNVLQSGDHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREEAIKTATLWKEINWLNLKQILPTRERASLILTKSANHAVEEVR
8	SAM-T99	2zsaA	0.221	0.992	4.454	threading_8	LTEEELVGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSACAPVYSHLHYDIIPGAEQVHPDILILEGLNVLQT-GPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTVVAAREIWRTINRPNLENILPTRPRATLVLRKDADHSINRL-
9	MUSTER	3tqcA	0.228	1.000	2.530	threading_9	LTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFYVTAEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQVRIPVYSHHYYDIVRGQEIVDPDIVILEGLNILQTGVLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTAAFAKHVWNEINKVNLMENIPYKNRAQLILEKAADHSIQKVY
10	SPARKS	3c8ua	0.295	0.844	4.172	threading_10	------------------GTLAALCQGVLERLD----PRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPA---EVVPDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQEVIYPLFDRARDIAIAGAAEVGPRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPA-DLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWP-----------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.726 to 1rz3A SCOP code=c.37.1.6	TM-score=0.815 to 1esmA SCOP code=c.37.1.6	TM-score=0.860 to 1esmA SCOP code=c.37.1.6	TM-score=0.721 to 1rz3A SCOP code=c.37.1.6	TM-score=0.722 to 1rz3A SCOP code=c.37.1.6