Template-based Modeling Results for YGFZ_ECOLI

Submitted Primary Sequence

>Length 326
MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE
CCCCCCCCCHHHHHHCCCCEEEECCCCEEEEEECCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCHHHHHHHHCCCCCCCCCCEEECCCEEEEECCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHCEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEHHHCCCCCEEEECCCCCEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE
44323212332001123300001011100000102202200100011202202332000000013412000000001123100000222112200210241112220201213210000010230310013012322233321122110000113111320000023200210022032303213220010001211112032211130002201131000011331011021000102232222200000102233113212102021134233001000001133220000000121133321010233221020120122269
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE
1	MUSTER	3ttgA	0.203	0.969	2.858	threading_1	-NLYFQGLVSDTRIAHKKFGLFYPVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFEDKIALFPPAGTREEFVNHLKKYLFFTKAKITDSDHFREIRLVGPETISVLLSLFDNNFSGSSFRLKNGGYVLITSFQHNLQADLFIPIDQFETTQKSLEDGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSV-GVSYNKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGPKEFP----VTLFNPKDGNEAGILTRTSSSDILGIGLGYIKRNFSENGTELLL-PDAQLVRVHSLPFV---
2	SPARKS	3ttga	0.199	0.969	6.345	threading_2	-NLYFQGEVSDTRIAHKKFGLFYPSSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFEDKIALFPPAGTREEFVNHLKKYLFFRKAKITDSDHFREIRLVGPETISVLLSLFDNNFSGSSFRLKNGGLIHPTSFQHNLDADLFIPIDQFETTQKSLEDGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSVG-VSYNKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGPKEFP----VTLFNPKDGNEAGILTRTSSSDILGIGLGYIKRNFSENGTELLL-PDAQLVRVHSLPFV---
3	PROSPECT2	1wooA	0.155	0.972	4.083	threading_3	MKRTPLSIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDELMVVNAANIEKDFNWIKSHSKNFDVEVSNIDTTALIAFQGPKAQETLQELVEDGLEEIAKSIVAGVETLVSGYTGEDGFELMLEAKNAPKVWDALKIDGRPAGLGARDVCRLEATYLLYGQDMDENTNPFEVGLSWV--VKLNKD-FVGKEALLKAKE--KVERKLVALELSGKRIARKGYEVLK----NGERVGEITSGNFSPTGKSIALALVSKSVKIGDQLGVVFPGGEALVVKKPFSVRR
4	PPA-I	3ttgA	0.199	0.969	3.868	threading_4	-NLYFQTEVSDTRIAHKKFGLFYPSSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFEDKIALFPPAGTREEFVNHLKKYLFRTKAKITDSDHFREIRLVGPETISVLLSLFDNNFSGSSFRLKNGGYVLITSFQHNLDADLFIPIDQFETTQKSLEDGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSV-GVSYNKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGPKEFP----VTLFNPKDGNEAGILTRTSSSDILGIGLGYIKRNFSENGTELLL-PDAQLVRVHSLPFV---
5	HHPRED-l	1vly_A	1.000	0.963	5.825	threading_5	--FTPFPPRQPTASARLPLTL-TLDDWALATITGADSEKY-QGQVTADVSQ-AEDQHLLAAHCDAKGK-WSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATAN-LTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQE-VARAKFRGANKRALWLLAGSASRLPEAGEDLELK-GENWRRTGTVLAAVKLEDGQVVVQVV-NND-EPDSIFRVRDDANTLHIEPLPYSLE-
6	HHPRED-g	1pj5_A	0.123	0.975	4.052	threading_6	RPYWFEAAAAEAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDFQLGANGNIDTAYFERAARHQTTDWVQVRDTTGTCCIGLWGPLARDLVSKVSDDDFTNLKVIGGIPVTAMRLSYVGELGWELYTSADNGQRLWDALWQGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFA--VKMAKESFIGKGALEGRTEEA-SARRLRCLTIDDRSIVLGKEPVFY----KEQAVGYVTSAAYGYTVAPIAYSYLPGTVSVGDSVDYFGRRITATVTEDPLYDPK
7	SP3	3ttga	0.193	0.969	6.539	threading_7	-NLYFQGEVSDTRIAHKKFGLFYPSSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFEDKIALFPPAGTREEFVNHLKKYLFFRKAKITDSDHFREIRLVGPETISVLLSLFDNNFSGSRLKNGGYVLIHPTSFQHNLDADLFIPIDQFETTQKSLEDGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSVG-VSYNKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGPKEFP----VTLFNPKDGNEAGILTRTSSSDILGIGLGYIKRNFSENGTELLL-PDAQLVRVHSLPFV---
8	SAM-T99	1nrkA	0.984	0.966	5.753	threading_8	-AFTPFPPRQPTASARLPLTLT-LDDWALATITGADSEKY-QGQVTADVSQ-AEDQHLLAAHCDAKGK-WSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATA-NLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQE-VARAKFRGANKRALWLLAGSASRLPEAGEDLEL-KGENWRRTGTVLAAVKLEDGQVVVQVVNND--EPDSIFRVRDDANTLHIEPLPYSLE-
9	MUSTER	1nrkA	0.904	0.957	2.664	threading_9	FPFPP----RQPTASARLPLTLTLDDWALATITGADSEKY-QGQVTADVSQAE-DQHLLAAHCDAKGKWSNL-RLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTD-EATANLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQE-VARAKFRGANKRALWLLAGSASRLPEAGEDLEL-KGENWRRTGTVLAAVKLEDGQVVVQVV---NDEPDSIFRVRDDANTLHIEPLPYSLE-
10	SPARKS	3tfha	0.127	0.969	6.160	threading_10	LPAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGKDSAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISADSDVIFFAKGLASG---HKFDVKIVPVVDIMAIQGPKSFALMEKVFGKKITELKFFEGTKHLIARSGWSKQGGYEVYVETQSGQKLYDHLFEKEFNVGPGCPLIERIESALLSYGNDFDNNDNPFECGFDQYVSLD-SDINFLGKEKLKEIKLKG-PQKKLRGVKIDIKEISLTGSKNIY--DENNNVIGELRSACYSPHFQIGIAMIKKSHWEASQGFKIQINDINGNVCDLPFI---

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.804 to 1nrkA TM-score=0.816 to native SCOP code=b.44.2.1	TM-score=0.801 to 1nrkA TM-score=0.814 to native SCOP code=b.44.2.1	TM-score=0.807 to 1nrkA TM-score=0.820 to native SCOP code=b.44.2.1	TM-score=0.894 to 1wopA TM-score=0.821 to native SCOP code=b.44.2.1	TM-score=0.804 to 1nrkA TM-score=0.817 to native SCOP code=b.44.2.1

Experimental Structure

Download 1nrkA

SCOP code=b.44.2.1