Template-based Modeling Results for YGEN_ECOLI

Submitted Primary Sequence

>Length 235
MRKKIEMSLIKSPANGVVIKRKISDGLKEIVSLKEKILLETTAKIQSIEEKREEKFIQGYYDGYTKGIIDEMDNFIPLISLLCSELEKKRINMINDLKSILLKPSEEVDVFIKIFESWVTKLPSISGPVNLHIPTSFKDKSLEVESYFVDKSIWNVHITFHDDKRFVFFTDQFIAEFSPQEFVDNCEQYLINNHCFSPDKVNEICEQARHYLVEKMFETHSLDMNNSVLASPEDL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRKKIEMSLIKSPANGVVIKRKISDGLKEIVSLKEKILLETTAKIQSIEEKREEKFIQGYYDGYTKGIIDEMDNFIPLISLLCSELEKKRINMINDLKSILLKPSEEVDVFIKIFESWVTKLPSISGPVNLHIPTSFKDKSLEVESYFVDKSIWNVHITFHDDKRFVFFTDQFIAEFSPQEFVDNCEQYLINNHCFSPDKVNEICEQARHYLVEKMFETHSLDMNNSVLASPEDL
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRKKIEMSLIKSPANGVVIKRKISDGLKEIVSLKEKILLETTAKIQSIEEKREEKFIQGYYDGYTKGIIDEMDNFIPLISLLCSELEKKRINMINDLKSILLKPSEEVDVFIKIFESWVTKLPSISGPVNLHIPTSFKDKSLEVESYFVDKSIWNVHITFHDDKRFVFFTDQFIAEFSPQEFVDNCEQYLINNHCFSPDKVNEICEQARHYLVEKMFETHSLDMNNSVLASPEDL
5543231222312131000113102002201212341122111103313332321001000200130001001100200020121022122101210330023204212000200210034133231201010131133101201110033111202010133310000023100201132002101210141212123102200220131002200211213122222223434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRKKIEMSLIKSPANGVVIKRKISDGLKEIVSLKEKILLETTAKIQSIEEKREEKFIQGYYDGYTKGIIDEMDNFIPLISLLCSELEKKRINMINDLKSILLKPSEEVDVFIKIFESWVTKLPSISGPVNLHIPTSFKDKSLEVESYFVDKSIWNVHITFHDDKRFVFFTDQFIAEFSPQEFVDNCEQYLINNHCFSPDKVNEICEQARHYLVEKMFETHSLDMNNSVLASPEDL
1	PROSPECT2	1oyzA	0.049	0.957	1.148	threading_1	YQKRKASKECKKLNDDELFRLNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILEDNVFNILACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRQDKNEEVRIEAIIGLSYRKDKRVLSVLCD-ELKKNTVYDDIIEAAGELGDKTLLPVLD---------TLYKFDDNS
2	HHPRED-g	3k5b_E	0.112	0.723	1.275	threading_2	--K----------LEAI-LSQ---EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVRRRVREALEA-LPQKPEWPEVVRKLALELP--GAK-ALVANPEDLPH---LEA-ARE---RGVEL-PALRLGVRAVGGKTQVENSLLAR-DRAWDA-SS------------------KVAQALWG-----------------
3	PROSPECT2	2qk2A	0.093	0.872	1.080	threading_3	LLDPVDILSKPKDFYDKLEEKKWTLRKESLEVLEKALVSALKKVITKDSNVVLVAAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LEAQQESIVESLSNKN--------PSVKSETALFIARALTRTQ---------------------PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKKAVTPLLADVDPLKAIKIKVA
4	HHPRED-g	2dm9_A	0.090	0.472	1.187	threading_4	---------------------------------------------------------------------------------------EIISSVLEEVKRRLETMSEYFESVKALLKEAIKELN--EKKVRVMSNEKTLLIASRIEEIKSELGDVSIELGETTMGGVIVETEDIRIDNTFEARMERFEGEIRS------------------TIAKVLFG-----------------
5	PROSPECT2	1q7mA1	0.114	0.860	1.079	threading_5	MRNR----------------REVSKLLSEYDDLPEELNIKAPDVVLKVHRSYIESRMKLRKHGLEDKLDPIVRNAVRIARRAAGEFEEFYENFRETVEIMVEEGVDELKAAVLAAREVAITFDELDIDALGINCSLGPEEILPIFQELSQYTDKFLVVEPNAGKP-IVENGKTVYPLKPHDFAVHIDSYYELGVNTTPEHVKLFRKV----------------LGNRKPLQRKKK
6	PROSPECT2	1t33A	0.096	0.757	1.067	threading_6	MNIPTT-------------TTKGEQAKSQLIAAALAQFGETRDIAALAKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLSPT------------------SAYQLVHEQV--------------------------IDPLHTHLTRLVAAGCDANDTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEK
7	PROSPECT2	2qc0A1	0.056	0.915	1.058	threading_7	AYNHLPPLPLDSKLAELAETLPILKACIPARAALAELKQAGELLPNQGLLINLLPLLEAQGSSEIENIVTTTDKLFQYAQEDSQKEALRYRTALYQCFTQLSNRPLCVTTALEICSTIKSVQDVRKVPGVIYTPPAGESVIRDLLSNWEAFLHNQDDLIDQQLLSAPILYLSRYIVAHKQDYYRLLLNVTTQQE------WQPWIIFILNAVEQTAKWTTH--------------
8	MUSTER	3m1iC1	0.100	0.889	0.652	threading_8	MEGILDFSNDLDI-------ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDQKADQILQFSNPQSKFIALSILDKLITRKNDHRIGIRNFVVGMIISMCQDDFKTQKNLINKSDLTLVQI------LKQEWPQNWP----EFIPELIGSS---------SSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKAHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESPYRY
9	SPARKS	1pb6a	0.114	0.745	0.600	threading_9	----------------------------AVSAKKKAILSAALDTFSQLEQIAELAKTNSKEALYIAVLRQILDIWLAPLKAFREDFA-PLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELT----GDLKALIDEKSALIAGW----------------VKSGK-LAPIDPQHLIFMIWASTQHYADFAPQVEAVTDEVFFNQTVENVQRI--------IIEGPR--
10	PROSPECT2	3b74A	0.100	0.936	1.044	threading_10	PQICSPNALPGTPGN---LTKEQEEALLQFRSILLEKINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKNLKKMYKITTEKQMLRNLVKEYEL-----FATYRVPACSRRAGYLIETSCTVLSLSNAYHVLSYIKDVADIS----QNYYPERMGKFYIIHS---PFGFSTMFKMVPVTVSKIFILGSSYKKELLKQKFYYSDIGPWRDPRYIGPEGEIPNTVTS

Predicted Tertiary Structure


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TM-score=0.757 to 1oyzA SCOP code=a.118.1.16	TM-score=0.535 to 1ifdA SCOP code=h.1.4.1	TM-score=0.631 to 1wa5C SCOP code=a.118.1.1	TM-score=0.605 to 2dmaA SCOP code=d.81.4.1	TM-score=0.510 to 1nsjA SCOP code=c.1.2.4