Template-based Modeling Results for YGDL_ECOLI


  Submitted Primary Sequence

>Length 268
MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG
CCCCCCHHHHHHHCCEEEEECHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCEEEEECCCEECCCCHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG
5532123212220101000013300210130100000000000100100030010000001012012100112000133202111020002103501130201001110223001200121000000000102010000100331511000000111301111010120140231100230233002211112214132102000012212223231220223222312322202102000000000000000020022012323544
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG
1MUSTER1jwbB0.2510.8472.122threading_1--AELSDQEMLRYNRQIILFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRC-LSRL-----FGEAGVMAPLIGVIG--SLQAMEAIKMLAGYGKPASGKREMKLMRNPGCEVC-G-----------------------------
2SPARKS1jw9b0.2510.8473.516threading_2--AELSDQEMLRYNRQIILFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLS------RLFGEAGVMAPLIGVIG--SLQAMEAIKMLAGYGKPASGKIVMYDAMTCGCEVCG------------------------------
3PROSPECT21zfnA0.2230.8023.028threading_3M----NDRDFMRYSRQILLIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAV-ARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCL------------------------------------------------WPDNQEPERNCRTAGVVGPVVGVMGTLQALEAIKLLSGIETPAG
4PPA-I1zkmA0.2210.8623.813threading_4----MNDRDFMRYSRQILLIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAV-ARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEPERCRTAGVVGPVVGVMG--TLQALEAIKLLSGIETPAGGKSSLALRRASGCPVCG------------------------------
5HHPRED-l1zud_10.2320.7573.621threading_5----MNDRDFMRYSRQILLIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKD-AVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTP---------------------------------------------PWEQGCYRCLWP--------------AGVVGPVVGVMGTLQALEAIKLLSGIETPA-
6HHPRED-g1jw9_B0.2500.7763.161threading_6-AE-LSDQEMLRYNRQIILFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEG-----QITVFQDGEPCY-------------------------RCLS-----------------RLFGE----------AGVMAPLIGVIGSLQAMEAIKMLAGYGKPAS
7SP31jw9b0.2560.8473.653threading_7--AELSDQEMLRYNRQIILFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLS------RLFGEAGVMAPLIGVIG--SLQAMEAIKMLAGYGKPASGKIVMYDAMTCGCEVC-G-----------------------------
8SAM-T991jwbB0.2330.7844.447threading_8--AELSDQEMLRYNRQIILFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFT---------------------------------------YQDGEP----------------CYRCLSRLFGEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPAS
9MUSTER1zkmA0.2300.8582.089threading_9----MNDRDFMRYSRQILLIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVA-RADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDN-PERNCRTAGVVGPVVGVMG--TLQALEAIKLLSGIETPASSQRSLALRRASGCPVC-G-----------------------------
10SPARKS1y8qa0.1860.9812.918threading_10---GISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDI-EKKPESFF-TQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYNLGEHEFVEEKTETTVFCPVKEALEVDWSSEKALKRTTSDYFLLQVLFRTDKGRDPSSDTYEEDSDSLGISPDLLPVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHN

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.887 to 1jwbB
SCOP code=c.111.1.1
TM-score=0.861 to 1jwbB
SCOP code=c.111.1.1
TM-score=0.859 to 1jwbB
SCOP code=c.111.1.1
TM-score=0.795 to 1jwbB
SCOP code=c.111.1.1
TM-score=0.846 to 1jwbB
SCOP code=c.111.1.1