Template-based Modeling Results for YGDH_ECOLI

Submitted Primary Sequence

>Length 454
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLRDILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLRDILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICT
CCEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEECCCHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLRDILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICT
4312101211120002111210242222300200100000002121222203200320331201002233001010210132012213002000200000000001000102312312323233223012100100211311220301100000002213331110023001100222010001002000100020002021322232110000022201223221320210010211320020003102000001100000310010000011222333210000001320220020002001200022223212000220220032023003202200332130000100020223022212100200130301332213100010120011001120232102002410213041133002201300210022232303122211001105
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLRDILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICT
1	MUSTER	3bq9A	0.617	0.982	3.605	threading_1	SLASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAGSSAD----IYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSE----TDLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT
2	SPARKS	3bq9a	0.617	0.982	9.448	threading_2	SLASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAGSSAD----IYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSE----TDLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT
3	PROSPECT2	3bq9A	0.619	0.982	5.383	threading_3	SLASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAGSSAD----IYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSET----DLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT
4	PPA-I	3bq9A	0.619	0.982	6.667	threading_4	SLASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAGSSAD----IYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSET----DLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT
5	HHPRED-l	3bq9_A	0.618	0.980	6.066	threading_5	SLASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAGS----SADIYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSET----DLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVI-
6	HHPRED-g	3bq9_A	0.619	0.982	5.994	threading_6	SLASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAGS----SADIYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSET----DLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT
7	SP3	3bq9a	0.617	0.982	9.141	threading_7	SLASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAGSSAD----IYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSE----TDLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT
8	SAM-T99	3bq9A	0.619	0.982	7.395	threading_8	SLASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAGSSAD----IYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSET----DLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT
9	MUSTER	3gh1A	0.656	0.934	3.102	threading_9	LIIQVSPAGS-DLLSQLEVERLKK--TSDLYQLYRNCSLAVLNS---TDNSKELLDKYKNFDITV-RRERGIKLELANPPEHAFVDGQIIKGIQEHLFSVLRDIVYVNH----------LADTNATHITNLVFGILRNAGALIPGATPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICTGCGPG--AEGPKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPNPIVNELVIPD--IEKRLEAFVRAHGIIIFPGGPGTAEELLYILGIH--PENADQP-PIVLTGPKQSEAYFRSLDKFITDTLGEAARKHYSIAIDNPAEAARISNA--PLVRQHRKDKEDAYSFNWSLKIEPEFQLPFEPNHE-SANLDLHLNQRPEVLAANLRRAFSGVVAGNVKAEGIREIERHGPFE-HGDPVLK--KDQLLNDFVAQNRKLPGGSAYEPCYKIVT
10	SPARKS	3gh1a	0.684	0.934	7.739	threading_10	LIIQVSPAGS-DLLSQLEVERLKK--TSDLYQLYRNCSLAVLNS---TDNSKELLDKYKNFDITV-RRERGIKLELANPPEHAFVDGQIIKGIQEHLFSVLRDIVYV----------NHLADTNATHITNLVFGILRNAGALIPGATPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICTGCGPGAEG--PKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPNPIVNELV-IPDIEKRLEAFVR-AHGIIIFPGGPGTAEELLYILGI--HPENADQP-PIVLTGPKQSEAYFRSLDKFITDTLGEAARKHYSIAIDNPAEAARISNA--PLVRQHRKDKEDAYSFNWSLKIEPEFQLPFEPNHES-ANLDLHLNQRPEVLAANLRRAFSGVVAGNVKAEGIREIERHGPFE-HGDPVLK--KDQLLNDFVAQNRKLPGGSAYEPCYKIVT

Predicted Tertiary Structure


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TM-score=0.600 to 1wehA SCOP code=c.129.1.1	TM-score=0.600 to 1wehA SCOP code=c.129.1.1	TM-score=0.600 to 1wehA SCOP code=c.129.1.1	TM-score=0.600 to 1wehA SCOP code=c.129.1.1	TM-score=0.600 to 1wehA SCOP code=c.129.1.1