Template-based Modeling Results for RLMM_ECOLI

Submitted Primary Sequence

>Length 366
MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIYECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGELRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYTGYSYSNNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAAVGGRRDER
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIYECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGELRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYTGYSYSNNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAAVGGRRDER
CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEECCCHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIYECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGELRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYTGYSYSNNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAAVGGRRDER
543000001220143002100210022301010202331000001012232012003302121000011000003203312332101100010221134011010200324212301300230011012003312122333234221000000111000000011322131211122131223110220010120021012233123212301100000002100010013221100000103003201401302002211122322422000000002230120010002002211021000002022443231012002101210242223010101101234310000012011322246548
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIYECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGELRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYTGYSYSNNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAAVGGRRDER
1	PROSPECT2	3k0bA	0.091	0.872	1.430	threading_1	SSGLVATAASGLEAIVGKEVAR-------LGY-DPKVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFK-------ATTFDELFEKTKAWEDYLPLDAQFPVAGSTLYSVPDCQAIVKKA---IVNRVSEKYRRSGRLETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETAAALVLL-------------TSWHPDRPFYDPVCGSGTIPIEAALIGQNIFVSETWDWPKQVWAD-----ARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREGIVYKRPTWSVYV--LTSYEL---------FEEVYGKKATK
2	SPARKS	1ej0a	0.217	0.429	2.004	threading_2	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLRSRAWFKLDEIQQSD-------KLFKPGMTVVDLGAAPGGWSQYVVTQKGRIIACDLLPMDP----IVGVDFLQGDFRDELVGDSKVQVVMSDMAPNIPRAMYLVELALEMVLAPGGSFVVKVQGEGFDEYLREIRSLFTKVKVRKPDSSRARSR-------EVYIVATGRKP---------
3	PROSPECT2	1fp1d	0.111	0.787	1.413	threading_3	QT----------EDSACLSAMVLTTN--------------------LVYPAVLNAAIDLN----------------------------LFEIIAKATPPGAFMSPSASKLPASTQHSDLPNRLDRMLR-LLASYSVLTTRTIEDGGAERVYGLSMVGKYL---VPDESRGYLASFTTFDEDFMGKDKKMNQIFNKSMVDVCATEMKRGFEGISTLVDVGGGSGRNLELIISPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVP---QGDAMILKAVEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGREKFQVACRAFNSLGVMEFY-------------K
4	PPA-I	3opnA	0.181	0.484	1.480	threading_4	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLRYVSRGGLKLEKALKEFHLE-------INGKTCLDIGSSTGGFTDVLQNGAKLVYALDTNQLAWKIRSDERVVVEQFNFRNAVLAQGRPSFTSIDVSISLDLILPPLYEILEKNG--EVAALIKPQFEAGRPKVHQTIEKVLKTATQLGFSVKGLTFSPIKGGAEFLVHLLKDGKAEIAQQVNI
5	PROSPECT2	3lduA	0.104	0.844	1.376	threading_5	-KNYTLISPCFFGEKLAREITN-------LGYEIIKTEDGRITYKTDEFGIAKSNWLRCAERVHLKIAEFE--------AKSFDELFENTKRINWSRYIPYKASSIKSKLYSTPDVQAIVKKA---IVESLKKSYLEDGLLKEDKEKYPIVFIHKDKVTISIDTTGDALHKRGY-----REKKAPIRETLAAGLI---------YLTPWKAGRVLVDGINAPGLWWDVRKDSKFKIYGYDIDEESIDIAREEYIEFNVGDATQFKSEDEF-GFIITNPPDSVKQLYKELGYAFRKLKNWSYYLIT--SYEDFEYEF----------------GQKADKKRKLYNGLKTNFFQY-----PGPKPPRN
6	HHPRED-l	3evf_A	0.196	0.516	2.665	threading_6	-----------------------------------------------------------------------------------------------------------------KTLGEVWKRELNLLKRQFELY--------KRTDIVE---VD-------------RDTARRHLAEGKVDGVAVSRGTAKLRWF-------HERG-YVKLEGRVIDLGCGRGGWCYYAAAQKGFTLGRD-GHEKPMN-----VQSLGWNIITFKDEPVKCDTLLCDIGERTVRVLDTVEKWLACGV---DNFCVKVLAPYMP-DVLEKLELLQRRFG--------------------GTVIRNP-LSRNSTHEM-
7	PROSPECT2	3dmfA	0.127	0.836	1.360	threading_7	LPGGRLFIKPGARRDPVHDLLQKTVEPFGVGWGSLPLEGRMAVERLETSRAAFRCLTASGLQA--------RLALPWEAAAGAAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARALL---------------------GYGVVVRREGPYRVALLEKEKEAPPLPSLWRAFSASAGKVDPASLLLLEALQ-----ERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSANALKAQALHSDVDEALTEEARFDIIVTVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYE------PLLEEKFGAF---------QTLKVAEYKVLFAEK-----------R
8	HHPRED-g	3p8z_A	0.228	0.516	2.363	threading_8	------------------------------------------------------------------------------------------------GETLGEKWK---------KKLNQLSR---KEFDLYKKSGITEDRTEAK----------------------------EGLKRGETTHHAVSRGSAKLQWFVERN--------MVIPEGRVIDLGCGRGGWSYYCAGLVTEVRGYTKGHEEPVPMSTYGVKLMSKDVFYL-PP-EKCDTLLCDIVEESTRVLKMVEPWLKNN-----QFCIKVLNP-YMPTVIEHLERLQRKHGG--------------------MLV--RNP---LSRNST
9	MUSTER	3hp7A	0.208	0.604	0.751	threading_9	-----------------------------------------------------------------------------------------------------------------------APK----VDVLAYKQGLFETREQAKRGVAVVNVINGERY----DKPGEKIDDGTELKLKGEKLRYVSRGGLKLEKALAVFN--------LSVEDITIDIGASTGGFTDVL-QNGALVYAVDVGQLVWKLRQDDRVRSEQYNFRYAEPVDGLPSFASIDVSISLNLILPALAKILVDGG--QVVALVKPQFERESSIHEKVLETVTAFAVDYG----FSVKGLDFSPIEFLAHLEK---DSPQNDVPT
10	SP3	1ej0a	0.217	0.429	1.821	threading_10	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLRSRAWFKLDEIQQSD-------KLFKPGMTVVDLGAAPGGWSQYVVTQKGRIIACDLLPMDP----IVGVDFLQGDFRDELVGDSKVQVVMSDMAPNIPRAMYLVELALEMVLAPGGSFVVKVQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVY----IVATGRKP------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.429 to 1i9gA SCOP code=c.66.1.13	TM-score=0.634 to 1ej0A SCOP code=c.66.1.2	TM-score=0.671 to 1fp1D SCOP code=a.4.5.29	TM-score=0.560 to 1nt2A SCOP code=c.66.1.3	TM-score=0.499 to 1ne2B SCOP code=c.66.1.32