Template-based Modeling Results for YGCU_ECOLI

Submitted Primary Sequence

>Length 484
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
CCCCHHHHHHHHHHHCCCCCEECCHHHHHHHCCCCCHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHCHHHHHHHHCCCCCCCEECCCHHHHEEEEEEECCCCEEEEECCCCCCCCCCCHHCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
5522222002101400223201113210231202202302322122222110000112123100300200231301000100110031002011220000001111100101342010001000113101200452111002013022002000000210201200010002200000100003020020221134110000210010030000000000010042224110000000320310020012002320100001001011002212121312000001021234203200300020023134021111222211121111001100010011122132121010000001012002101320221033033110000000000220000000011202223233102300210131002000402000011000022112102222121010020013100030011101103248
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
1	MUSTER	3pm9A	0.207	0.930	3.027	threading_1	-TLS-PELIARFTAIVGDKHALTDPLELEAYITEERNLY--------RGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGG-QTPHNGEVVISLK-RDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARD-ALGVEVVLADGRVNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFP-KPRAVETAFVGLQSPDDALKLLGIAQGEAGNLTSFELIAETPLDFSVRHAARYPWYVLIELSSPRDDARAALESILERGFEDGIVDAAIANS--VQQQQAFWKLREEISPAQKPEGG---SIKHDISVPVAAVPQFIEQANAAVVALI-----PGARPVPFGHLGDGNIHYNVSQP----VGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGV-KRDELAEVKDKTAIELRSIKALLDPHGI-NPGKVV----
2	SPARKS	3pm9a	0.206	0.932	6.541	threading_2	-TLS-PELIARFTAIVGDKHALTDPLELEAYITEERNLYR--------GHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGG-QTPHNGEVVISLK-RDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARD-ALGVEVVLADGRVNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFP-KPRAVETAFVGLQSPDDALKLLGIAQGEAGNLTSFELIAETPLDFSVRHEARYPWYVLIELSSPRDDARAALESILERGFEDGIVV-DAAIANSVQQQQAFWKLREEISPAQKPEGG---SIKHDISVPVAAVPQFIEQANAAVVAL-----IPGARPVPFGHLGDGNIHYNVS----QPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGV-KRDELAEVKDKTAIELRSIKALLDPHGI-NPGKVV----
3	PROSPECT2	2uuuA	0.234	0.917	4.925	threading_3	MPKQYPEFVRELKAFFLPDQLKDDKLARITHTFGKLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSRFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTL--------ELRGINYKHIILGSEGTLGIITEAVMKVHA-VPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDL-----PYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNENKDMAQYIE----AKKLMTDIIFKYGGSLSRGW-----------------INVYRSLKETIDPKDICNPRKL-----
4	PPA-I	3pm9A	0.200	0.932	4.596	threading_4	--TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYR--------GHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGG-QTPHNGEVVISLK-RDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARD-ALGVEVVLADGRVNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFP-KPRAVETAFVGLQSPDDALKLLGIAQGEAGNLTSFELIAETPLDFSVPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIAN-SVQQQQAFWKLREEISPAQKPEGG---SIKHDISVPVAAVPQFIEQANAAVVALI-----PGARPVPFGHLGDGNIHYNVSQPV----GADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGV-KRDELAEVKDKTAIELRSIKALLDPHGI-NPGKVV----
5	HHPRED-l	2uuu_A	0.235	0.913	3.946	threading_5	PPKQYPEFVRELKAFFP-DQLKDDKLARITHTFGKSRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELR--------GINYKHIILGSEGTLGIITEAVMKVHAVPQA-VEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLYRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLG-SAPGKTWAEKR----YDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNENKDM----AQYIEAKKLMTDIIFKYGGSLS------------------RWINVYRSLKETIDPKDICNPRKL-----
6	HHPRED-g	3pm9_A	0.203	0.917	4.521	threading_6	--TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYR--------GHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGG-QTPHNGEVVISLKR-DKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARD-ALGVEVVLADGRV-NLLSKLKKNTGYDLRDLFIGAEGTLGIITAATLKLFP-KPRAVETAFVGLQSPDDALKLLGIAQGAAGNLTSFELIAETPLDFSVRDPLRYPWYVLIELSSPRDDARAALESILERGFEDGIVDAAIANS--VQQQQAFWKLREEISPAQKPEG---GSIKHDISVPVAAVPQFIEQAN-------AAVVALGARPVPFGHLGDGNIHYNVSQ-----PVADKAELARWHD-VSQVVFEVVLRLGGSISAEHGIGV-KRDELAEVKDKAIEL-RSIKALLDPHGI-NPGKVV----
7	SP3	3pm9a	0.205	0.928	7.043	threading_7	LS---PELIARFTAIVGDKHALTDPLELEAYITEERNLYR--------GHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGG-QTPHNGEVVISLK-RDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARD-ALGVEVVLADGRVNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFP-KPRAVETAFVGLQSPDDALKLLGIAQGEAGNLTSFELIAETPLDFSVRHAARYPWYVLIELSSPRDDARAALESILERGFEDGIVDAAIANS--VQQQQAFWKLREEISPAQKPEGG---SIKHDISVPVAAVPQFIEQANAAVVAL-----IPGARPVPFGHLGDGNIHYNVS----QPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGV-KRDELAEVKDKTAIELRSIKALLDPHGI-NPGKVV----
8	SAM-T99	2uuuA	0.228	0.915	7.037	threading_8	PPKQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGT-LELR-------GINYKHIILGSEGTLGIITEAVMKVHAV-PQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAE-----KRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQN----ENKDMAQYIEAKKLMTDIIFKYGGSLS------------------RWINVYRSLKETIDPKDICNPRKL-----
9	MUSTER	1diqA	0.172	0.946	2.872	threading_9	VTQGFNKAVQKFRALLGDDNVLVESDQLVPYNKIMM------PVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAP--SAIAGPVGNTDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMGVPGSNGYGPTLDGMFTQANYGICTKMGFWLMP-KPPVFKPFEVIFEDIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAG---DTQPFKYRAQLMSGVPNLQEFGSMWFAPVSEAGSECKKQAAMAKRVLHKYG-------LDYVAEFIVAPRDMHHVIDV---LYDRTN-PEETKRADACFNELLDEFEKEGY---AVYRVNTRFQDRVAQSYPVKRKLEHAIKRAVDPNNILAPGRSGIDLN
10	SPARKS	1diqa	0.175	0.959	5.450	threading_10	VTQEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMM------PVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSA-PSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMGGPGSNTWQIFKDGMFTQANYGICTKMGFWLMP-KPPVFKPFEVIFEDIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVT---QEEAGDTQPFKYRAQLMSQEFGLYNWRGGGGSMWFAPVSEAR--GSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTN----PEETKRADACFNELLDEFEKEGY---AVYRVNTRFQDRVAQSYGVKRKLEHAIKRAVDPNNILAPGRSIDLNN

Predicted Tertiary Structure


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TM-score=0.807 to 1diqA SCOP code=d.58.32.1	TM-score=0.809 to 1diqA SCOP code=d.58.32.1	TM-score=0.793 to 1diqA SCOP code=d.58.32.1	TM-score=0.743 to 1diqA SCOP code=d.58.32.1	TM-score=0.802 to 1diqA SCOP code=d.58.32.1