Template-based Modeling Results for YGCN_ECOLI

Submitted Primary Sequence

>Length 423
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHCCCCHHCCCEEEEEEEEECCCCCEECCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCEEEEEEEEEECCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEECCHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHCHHHHHHHCCCCEECCEEEEEECCCCCCCCCEEECCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
554300000000000000001201312010000122322223110111011200120022032212222201220000003311121221332220000001100200021034221200210102001233120000112222020100000300102002212123432122000001100202222123313132331110001031032010000010232100000000121214232202200210221020222032221121001000211121122200020000000002101210010200100000020002001100333323310220121012100120021022002003320112100100110022002323432220121012102210002000100201333
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
1	MUSTER	2gmhA	0.239	0.969	2.222	threading_1	MEEEADVVIVGAGPAGLSAATRLKQLDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKKGAPLNTPVTEDRFGILTEKYRIPVPILMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFEDGSVKGIATNDLELHAKVTIFAEGCHGHLAKQLDLRANCEPQTYGIGLKELWVIDEKKWKPGR-------VDHTVGWPLDRHTYGGSFLYHLNELLALGFVVGLDYQNPYLS-PFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPK-LTFPGGLLIGCSPG--FMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSHVTEYEDNLKNSWVWKELYSVRNIRPSCHGI--LGVYGGMIYTGIFYWIFRGMEPWTLKHKGSAKDCTPIEYPKISFDLLSSVALS
2	SPARKS	2gmha	0.236	0.972	4.419	threading_2	MEEEADVVIVGAGPAGLSAATRLKQLDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKKGAPLNTPVTEDRFGILTEKYRIPVPIPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEIFHEDGSVKGIATNDLELHAKVTIFAEGCHGQLYKKFDLRANCEPQTYGIGLKELWVIDEKKWKPGR-VDHTVGWP------LDRHTYGGSFLYHGEPLLALGFVVGLDYQNPYLS-PFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPK-LTFPGGLLIGCSPGFM--NVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKVTEYEDNLKNSWVWKELYSVRNIRPSCHGILG-VYGGMIYTGIFYWIFTLKHKGSDSDQLKPAKDCTPIEYPQISFDLLSSVALS
3	PROSPECT2	3atqA	0.168	0.941	4.028	threading_3	MELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWIGDKPCGDA-VSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQTVWTVN-----GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVNEELTVYSKVVVEATGYSRSFRSKLPPEEDLDDKDADVAYREVLLTKED--------IEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGGMGYP---SIHEYYKKY--LDKYAPDVDKSKLLVKGGALVPTRRP---LYTMAWNGIIVIGDSGF--TVNPVHGGGKGSAMISGYCAAKAILSAFETGDSASGLWDMNICYVNEY-GAKQASLDIFRRFLQKLSNDDINYGMKKEEDLLEASEKGDLHLSVADKAMRVISGLGRPSLLFKLKAVAESM
4	PPA-I	3cgvA	0.166	0.868	2.667	threading_4	-GETYDVLVVGGGPGGSTAARYAAKYGLKTLIEKRPE-IGSPVRCGEGLSKGILNEADIKA-DRSFIANEVKGARIYGPSEKRPIILQ----NEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKINEIVDVRAKVIAADGFESEFGRWAGLKSVILARNDIISALQYRI----------NVDVDPDYTDFYLGSIAPA--GYIWVFPKGEGANVGIGSSINWIHNRFELKNYLDRFIENHPGLKKG----QDIQLVTGGVSVSKVKPI------TPGLLVGDAARLI--DPITGGGIANAIVSGYAAQVTKEAIESNDYS--PQQKYEKLIKERFERKHLRNWVAKEKLALSDDTLDKLVDIVSEQVLTTISVEAILKAIAEKYP-----------------------
5	HHPRED-l	2gmh_A	0.224	0.960	2.555	threading_5	FAEEADVVIVGAGPAGLSAATRLKQKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKKGAPLNTPVTEDRFGILTEKYRIPVPILPNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGFERGLELHAKVTIFAEGCHGHLAKQLYKKANCEPQTYGIGLKELWVIDEKKW--------KPGRVDHTVGWPLDYGGSFLYHNEGEPLLALGFVVGLDYQ-NPYLSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPK-LTFPGGLLIGCSPGFM--NVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKVTEYEDNLKNSWVWKELYSVRNIRPSCHGIL--GVYGGMIYTGIYWIFR-GMEPWT-LKHKPAKDCTPIEYISLLSSVALSGRN-
6	HHPRED-g	2gmh_A	0.244	0.967	5.814	threading_6	FAEEADVVIVGAGPAGLSAATRLKQLDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEGAPLNTPVTEDRFGILTEKYRIPVPIPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAELFHEDGSVKGIATNDLELHAKVTIFAEGCHGHLAKKFDLRANCEPQTYGIGLKELWVIDEKK--------WKPGRVDHTVGWPLDHTYGGSFLYHLNELLALGFVVGLDYQNPYLSPFREF-QRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSP--GFMN-VPKIKGTHTAMKSGTLAAESIFNQLTSENLQSHVTEYEDNLKNSWVWKELYSVRNIRPSCHGI--LGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDCTPIEYPKPDGQIFDLLSSV
7	SP3	2gmha	0.237	0.969	4.725	threading_7	MEEEADVVIVGAGPAGLSAATRLKQLDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKKGAPLNTPVTEDRFGILTEKYRIPVPIPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAELFHEDGSVKGIATNDLELHAKVTIFAEGCHGHLAKQLDLRANCEPQTYGIGLKELWVIDEKKWKPGR-VDHTVGWP------LDRHTYGGSFLYHGEPLLALGFVVGLDYQNPYLS-PFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPK-LTFPGGLLIGCSPGFM--NVPKIKGTHTAMKSGTLAAESIFNQLTSENIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGI--LGVYGGMIYTGFYWIFTLKHKGSDSDQLKPAKDCTPIEYPKISFDLLSSVALS
8	SAM-T99	2gmhA	0.246	0.972	8.604	threading_8	FAEEADVVIVGAGPAGLSAATRLKQLDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEGAPLNTPVTEDRFGILTEKYRIPVPILMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFEDGSVKGIATNDLELHAKVTIFAEGCHGHLAKKFDLRANCEPQTYGIGLKELWVIDEKKWK--------PGRVDHTVGWPLDHTYGGSFLYHLNEGLALGFVVGLDYQNPY-LSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPK-LTFPGGLLIGCSPGFM--NVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKVTEYEDNLKNSWVWKELYSVRNIRPSCHGILGVYIYTGIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLL
9	MUSTER	3atqA	0.168	0.941	1.982	threading_9	MKLKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWIGDKPC-GDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQTVWTV-----NGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLEELTVYSKVVVEATGYSRSFRSKLPITEDLDDKDADVAYREVLLTKED-------IEDHDYLRIFIDQETSPGGYW-WYFPKGKNKVNVGLGIQGGMGYPS------IHEYYKKYDKYAPDVDKSKLLVKGGALVPTRR---PLYTMAWNGIIVIGDSGF--TVNPVHGGGKGSAMISGYCAAKAILSAFETGDSASGLWDMNICYVNEYGAKQASLDIRFLQKLSNDDINYGMKKIIKEEDLLEASEKGDLHLSVADKAMRVISGLGRPSLLFKLKAVAESM
10	SPARKS	3atqa	0.171	0.941	3.663	threading_10	MKLKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPRIGDKPCGD-AVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQTVWTVN-----GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNLTVYSKVVVEATGYSRSFRSKLPPEEDLDDKDADVAYREVLLTKEDIEDH--------DYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGGMGYPSI---HEYYKKY--LDKYAPDVDKSKLLVKGGALVPTRR---PLYTMAWNGIIVIGDSGFTV--NPVHGGGKGSAMISGYCAAKAILSAFETGDSASGLWDMNICYVNEY-GAKQASLDIFRRFLQKLSNYGMKKKIIKEEDLLEASEKGDLHLSVADKAMRVISGLGRPSLLFKLKAVAESM

Predicted Tertiary Structure


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TM-score=0.826 to 2gmhA SCOP code=c.3.1.2	TM-score=0.830 to 2gmhA SCOP code=c.3.1.2	TM-score=0.827 to 2gmhA SCOP code=c.3.1.2	TM-score=0.720 to 1phhA SCOP code=c.3.1.2	TM-score=0.722 to 1phhA SCOP code=c.3.1.2