Template-based Modeling Results for YGCK_ECOLI

Submitted Primary Sequence

>Length 160
MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
CCCCCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
5533221110020024034021110340221320220000010022222332421100000000010122214233332332211200100033241223201200321221100201100120222120210020011102311120012001222334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
1	MUSTER	2zcaB	0.174	0.900	1.519	threading_1	----SPGERFLDWLKRLWTAARAAFRRSFPPGAYPRAPYVEPFLAKGDW-RQEEREAHYLVAALYALKD---------GDHQVGRTLARALWEKAQGSEKRFLALLEADRDQIAFRLRQAVALVEGGIDFARLLDDLLRWFSHVQARWAREYYGAGAS--
2	SPARKS	2zcaa	0.167	0.900	0.997	threading_2	----SPGERFLDWLKRLQGQKRAAFRRSLAPGAYPRAPYVEPFLAKGDWR--QEEREAHYLVAALYA-----LKDGDHQVGRTLARALWEKAQGSASVEKRFLALLEADRDQIAFRLRQAVALVEGGIDFARLLDDLLRWERHVQARWAREYYGA-----
3	PROSPECT2	2zcaA	0.184	0.881	1.238	threading_3	----SPGERFLDWLKRLQGQKRAAFRRSFPPGAYPRAPYVEPFLAKGDWRQEEREAHYLVAALYALK----------DGDHQVGRTLARALWQGSASVEKRFLALLEADRDQIAFRLRQAVALVEGGIDFARLLDDLLRWFRHVQARWAREYY-----GA
4	PPA-I	2zcaB	0.167	0.900	1.245	threading_4	----SPGERFLDWLKRLWTAARAAFRRSFPPGAYPRAPYVEPFLAKG-DWRQEEREAHYLVAALYALKD---------GDHQVGRTLARALWEKAQGSEKRFLALLEADRDQIAFRLRQAVALVEGGIDFARLLDDLLRWFSHVQARWAREYYGAGAS--
5	HHPRED-l	2zca_A	0.146	0.900	7.003	threading_5	-SPG---ERFLDWLKRLKTAARAAFRRSLAFPPGAYPRA-PYVEPFLAKGDWEEREAHYLVAALYALKDG-----DHQVGRTLARALWEKAQ-GSASVEKRFLALLEADRDQIAFRLRQAVALVEGGIDFARLLDDLLRWFRHVQARWAREYYGA-----
6	HHPRED-g	2zca_A	0.163	0.881	6.816	threading_6	-SPG---ERFLDWLKRLKTAARAAFRRSLAFPPGAYPRA-PYVEPFLAKGDWEEREAHYLVAALYALKDGDH---------QVGRTLARALWEGSASVEKRFLALLEADRDQIAFRLRQAVALVEGGIDFARLLDDLLRWFRHVQARWAREYYGA-----
7	SP3	2zcaa	0.167	0.900	0.762	threading_7	----SPGERFLDWLKRLQGAARAAFRRSLPPGAYPRAPYVEPFLAKGDWR--QEEREAHYLVAALYA-----LKDGDHQVGRTLARALWEKAQGSASVEKRFLALLEADRDQIAFRLRQAVALVEGGIDFARLLDDLLRWERHVQARWAREYYGA-----
8	SAM-T99	2zcaB	0.208	0.900	1.706	threading_8	-----PGERFLDWLKRLWTAARAAFRRSLAFPPGAYPRAPY-VEPFLAKGDWRQEEREAYLVAALYALK--------DGDHQVGRTLARALWEKSASVEKRFLALLEADRDQIAFRLRQAVALVEGGIDFARLLDDLLRWFSPERHVWAREYYGAGAS--
9	MUSTER	2zcaB2	0.215	0.494	0.866	threading_9	-------------------------------------------------------------------------------DHQVGRTLARALWEKAQGSEKRFLALLEADRDQIAFRLRQAVALVEGGIDFARLLDDLLRWFSHVQARWAREYYGAGAS--
10	SPARKS	3keya	0.156	0.963	0.657	threading_10	--RTSAKSNLMLILLGLQMKSNSDLYKLKEVRSVVTSLASFLFQQGVMKSFDSLEKEAFRDLVNRLVSQGLIGLKDKTSETFDLLPLKNLFE----YAEKRISVLMKLQCYTGTVQLSHVQEKLHPYITTNGIVDVFKECLKRTKKEVLKNWWIDLDNSG

Predicted Tertiary Structure


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TM-score=0.431 to 1of9A SCOP code=a.64.1.4	TM-score=0.433 to 1oglA SCOP code=a.204.1.1	TM-score=0.441 to 2g03A SCOP code=a.265.1.1	TM-score=0.444 to 1qdmA SCOP code=a.64.1.2	TM-score=0.426 to 1of9A SCOP code=a.64.1.4